PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554333.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ZF-HD
Protein Properties Length: 322aa    MW: 36484.3 Da    PI: 7.8881
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1001.6e-3198155260
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     ++++YkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+ ve e
  XP_010554333.1  98 QGTKYKECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKVVEGE 155
                     5689*************************9.999********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.2E-28100152IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-25101155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.8E-31101150IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.576102151IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.1E-30226294IPR009057Homeodomain-like
SuperFamilySSF466894.05E-19227293IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-27232288IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEISSQEDHE VPIPINSAYG GGLGHLTHHH HHDPAANSAH SAHGNSTNII NPEIPSNGNN  60
GHGHYEHHHD QEDHHHRRHH QHVGGYNIII NKKQRQQQGT KYKECLKNHA AAMGGNATDG  120
CGEFMPSGEE GTIEALTCSA CNCHRNFHRK VVEGETIPLP YYHHYHHPPP RQLMLTHHHR  180
HNNNAHKIRS AVPHQMIVPY MPNSESEDQM EEDGGGVSMA AARPAPPYSH QKKRFRTKFT  240
QEQKEKMMNF AERVGWKIQR QEESVVQQFC QEIGVKRRVL KVWMHNNKHN LAKKKNSTDN  300
VNDLNMSGSN DNNATGNLDS TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-222332901875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554333.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164101e-39AC216410.1 Populus trichocarpa clone POP030-A06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554332.10.0PREDICTED: zinc-finger homeodomain protein 4
RefseqXP_010554333.10.0PREDICTED: zinc-finger homeodomain protein 4
RefseqXP_010554334.10.0PREDICTED: zinc-finger homeodomain protein 4
RefseqXP_010554335.10.0PREDICTED: zinc-finger homeodomain protein 4
RefseqXP_010554336.10.0PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S01e-106ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLD7KBK31e-105D7KBK3_ARALL; ATHB31
STRINGXP_010554331.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.29e-84homeobox protein 31