PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554050.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 202aa    MW: 23135.9 Da    PI: 6.5183
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554050.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
   XP_010554050.1 16 KGPWTMEEDLILINYITHHGDGVWNSLAKAAGLKRTGKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding53.17.4e-1769112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++++ ++++++G++ W++Ia++++ gRt++++k++w++
   XP_010554050.1  69 RGNITAEEQLIIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 112
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-231066IPR009057Homeodomain-like
PROSITE profilePS5129415.331163IPR017930Myb domain
SuperFamilySSF466891.16E-2914110IPR009057Homeodomain-like
SMARTSM007173.1E-121565IPR001005SANT/Myb domain
PfamPF002499.6E-161663IPR001005SANT/Myb domain
CDDcd001678.17E-101863No hitNo description
PROSITE profilePS5129424.20864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2467117IPR009057Homeodomain-like
SMARTSM007177.8E-1568116IPR001005SANT/Myb domain
PfamPF002491.9E-1569112IPR001005SANT/Myb domain
CDDcd001678.76E-1273112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEKIGSSGSE EAEVRKGPWT MEEDLILINY ITHHGDGVWN SLAKAAGLKR TGKSCRLRWL  60
NYLRPDVRRG NITAEEQLII MELHAKWGNR WSKIAKHLPG RTDNEIKNFW RTRVQKYIKQ  120
SETTSSVGSQ GSEINDQYPS HVFSARDAME AYSTTTSYQG DMELNHSYPM SSVSPMSLTV  180
DQPGENYWTM DDLWSMQLLD SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261311824128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554050.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554050.11e-151PREDICTED: transcription factor MYB21-like
SwissprotQ9LK951e-98MYB21_ARATH; Transcription factor MYB21
TrEMBLA0A178VHJ73e-96A0A178VHJ7_ARATH; MYB21
STRINGXP_010554050.11e-150(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-101myb domain protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Su Z, et al.
    Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis.
    Plant Cell, 2013. 25(10): p. 3785-807
    [PMID:24179129]
  3. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  4. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  5. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]