PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010554003.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 319aa MW: 36281.9 Da PI: 8.3842

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554003.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.2	2.8e-52	15	141	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPtdeelv +yLk+k+ +++l++ e ik+vdiyk++PwdLp+ ++ +ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ XP_010554003.1 15 LPGFRFHPTDEELVGFYLKRKILQRSLPI-ELIKQVDIYKYDPWDLPRLATMGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSd 108 69*************************.89***********8777899***********************************95 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfy+gra kg ktdW+mhe+rl XP_010554003.1 109 GTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141 6667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-59	13	178	IPR003441	NAC domain
PROSITE profile	PS51005	56.164	14	178	IPR003441	NAC domain
Pfam	PF02365	1.4E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MDEQSNVERF DDVVLPGFRF HPTDEELVGF YLKRKILQRS LPIELIKQVD IYKYDPWDLP 60 RLATMGEKEW YFYCPRDRKY RNSTRPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYRGRAAKGI KTDWMMHEFR LPSPSDHHHS PNNAKKLHLS NKDLPCCDSW AICRIFKKTV 180 NSVSSQRTLQ QSWICPKIPE NTHQSSTQTS TLFASYSSSS DILSQIAHQE HSVITTLPFP 240 PPSSSSAAAA VFTSQMLGVP YNCAKNNVNV SMETSFMNSN NNDHINYFNM EVVRSEECEN 300 GRVWFSGAGN VAGDGAVWE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-55	16	178	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-55	16	178	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-55	16	178	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-55	16	178	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-55	16	178	22	168	NAC domain-containing protein 19
3swm_B	5e-55	16	178	22	168	NAC domain-containing protein 19
3swm_C	5e-55	16	178	22	168	NAC domain-containing protein 19
3swm_D	5e-55	16	178	22	168	NAC domain-containing protein 19
3swp_A	5e-55	16	178	22	168	NAC domain-containing protein 19
3swp_B	5e-55	16	178	22	168	NAC domain-containing protein 19
3swp_C	5e-55	16	178	22	168	NAC domain-containing protein 19
3swp_D	5e-55	16	178	22	168	NAC domain-containing protein 19
4dul_A	5e-55	16	178	19	165	NAC domain-containing protein 19
4dul_B	5e-55	16	178	19	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00537	DAP	Transfer from AT5G39820	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010554003.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q9FIW5	1e-136	NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBL	A0A178UNX8	1e-134	A0A178UNX8_ARATH; NAC094
STRING	XP_010554003.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	1e-134	NAC domain containing protein 94