PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010553936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 432aa MW: 49061.3 Da PI: 7.4023 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.8 | 9.3e-39 | 112 | 282 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 ++kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt+eWLl+++ +ai e++ XP_010553936.1 112 PVKKDRHSKIHTAQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLEWLLKKSRKAIREAVVVhtkkvnngefnganvedecygnpigdkggee 206 68***********************************************************9998888888888855555555544444333222 PP TCP 66 ...ssssaseceaesssssasnsssg.........................kaaksaakskksqksaasalnlak.esrakarararertrekmr 131 + + k+ + + +++++++++ +n+ sr+k+r+ a+e r+k XP_010553936.1 207 eddE---------------------EdeyedksfvsgssseycedvvyhetKKPEIGGSVRREKRKKTELSNIPSkGSRSKSRESAKEIARDKIG 280 1110.....................012223344445555678888887653333333444444444445554444999*******998888876 PP TCP 132 ik 133 + XP_010553936.1 281 SR 282 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-38 | 113 | 278 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.371 | 114 | 172 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MFSSNNHNHN ENGVYPLALC LSPFSSHDGN ISASYNHHHQ HHHNHQHHNQ QNLHPNDPLM 60 AAAHNHQFSS SIMPESLINY MAFSSNNVMM EQNLVYGGCS DQVEVLRGTK KPVKKDRHSK 120 IHTAQGLRDR RVRLSIGIAR QFFDLQDMLG FDKASKTLEW LLKKSRKAIR EAVVVHTKKV 180 NNGEFNGANV EDECYGNPIG DKGGEEEDDE EDEYEDKSFV SGSSSEYCED VVYHETKKPE 240 IGGSVRREKR KKTELSNIPS KGSRSKSRES AKEIARDKIG SRNIDHPATA YEISQSQFLD 300 SLRSTRVNER EKRLSTASVH GQDKTYSLYE NRTEELNRFL GQYSANQESV SVRRKIKPSM 360 PSVLSYDQQN GGVTLKDQSN NINNITIIPQ NWDIYDQNPF VDPPFCALSN MNMSTVNGET 420 YIAKKIMHQA PN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-15 | 119 | 169 | 1 | 51 | Putative transcription factor PCF6 |
5zkt_B | 8e-15 | 119 | 169 | 1 | 51 | Putative transcription factor PCF6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010553936.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553936.1 | 0.0 | PREDICTED: transcription factor TCP1-like isoform X1 | ||||
STRING | XP_010553936.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6733 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-71 | TCP family protein |