PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553917.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 284aa    MW: 30464.4 Da    PI: 7.0147
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.8e-294104196
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P++G+vg++++++++++q+
  XP_010553917.1   4 SCNGCRVLRKGCTENCSIRPCLqwiksAEAQANATVFLAKFYGRAGLLNLINAGPDHLRPEVFRSLLYEACGRIVNPINGSVGLLWSGNWHMCQA 98 
                     6*********************9999777889*************************************************************** PP

          DUF260  91 kaelal 96 
                     ++e+ +
  XP_010553917.1  99 AVEAGM 104
                     999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381555.4E-871283IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.8423109IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTENCS IRPCLQWIKS AEAQANATVF LAKFYGRAGL LNLINAGPDH  60
LRPEVFRSLL YEACGRIVNP INGSVGLLWS GNWHMCQAAV EAGMKGSPVT VMIASDAVAT  120
VHVPPLKVYD IRHVTRDESS GGGSDGHGGR HVKSRCRSKR ISEIAQPRTH DAAEETLFPA  180
PDAVEWGRAC DRSTSHDSSL SHQSELLAAA EGGGDSKDEE SMASEETAQL LAVSRPAVDG  240
IGLELKLGPE SVSRANHVKK RKVESSGTCE EGGTCRIELG IDFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159RCRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553917.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553917.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-103LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2I4EBL01e-108A0A2I4EBL0_JUGRE; LOB domain-containing protein 41-like
STRINGXP_010553917.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-92LOB domain-containing protein 41