PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553871.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRF
Protein Properties Length: 312aa    MW: 34847.6 Da    PI: 8.6903
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.41.4e-2467111145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  XP_010553871.1  67 DPEPGRCRRTDGKKWRCSKEAHPNSKYCERHMHRGRNRSRKPVES 111
                     79****************************************997 PP
2QLQ53.47.8e-19541137
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    s+F+ +Q+q+L++Q+l++Ky++a++ vPp+L+++iqk
  XP_010553871.1  5 SPFSVSQWQELEHQALIFKYIIAGLHVPPDLMVPIQK 41
                    89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-10541IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.044641IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.2E-13640IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.62467111IPR014977WRC domain
PfamPF088799.6E-2168110IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKSSSPFSVS QWQELEHQAL IFKYIIAGLH VPPDLMVPIQ KSFENISHRF FNHPSLSYCS  60
LYGKKIDPEP GRCRRTDGKK WRCSKEAHPN SKYCERHMHR GRNRSRKPVE SSVQTNKTST  120
YSSPLSSSVT SSSFPGGGNA ANYQSLPLHS FGNMQPAAAS LNHNQSTYNM DSIPFGIPSK  180
DYRYMQVQEG LKPESVEHSF FSGASGSDRR AQTSLLENNT TWPVMLSSLH NSCAQTSSFL  240
DIDFASRETT KQDGQPLRPF FDEWPKARAP WSGLEDDRSN QTSYSTTQLS ISTPVVSSDL  300
SAANSHSPHA DT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553871.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553871.10.0PREDICTED: growth-regulating factor 4-like isoform X1
TrEMBLA0A067L6251e-131A0A067L625_JATCU; Uncharacterized protein
STRINGXP_010553871.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143391019
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-41growth-regulating factor 5