PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010553790.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 441aa MW: 48052.2 Da PI: 7.4051

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010553790.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.8	2.4e-38	94	154	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC+s +tkfCy+nny+++qPr+fCk C+ryWt+GG +rnvPvG+grrknk+ s XP_010553790.1 94 PDKIIPCPRCNSLDTKFCYFNNYNVNQPRHFCKDCQRYWTAGGMMRNVPVGAGRRKNKQFS 154 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	83	151	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-31	96	152	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.286	98	152	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	100	136	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MDGCDSLKRR DPAIKLFGRK IPLPESQIPT KPISSEITDA VKNPDFYLGL SNSKEEHKVC 60 GESNGEIVKF KSKEEQSEAG GTEQEEQEKA FKKPDKIIPC PRCNSLDTKF CYFNNYNVNQ 120 PRHFCKDCQR YWTAGGMMRN VPVGAGRRKN KQFSSQYRQI LVSPGGNPIT KIETTDSVNN 180 QIASPVGSGI VLKFDTEPPV CESMETMLQL GGQKNVKTAG IGGHEPEQSD SRASASATPG 240 NRSHDLTVNV LTKEQATPQG SLPFYPFPPW SFPMNAGLSG IAAENGGNTS RIQLFPTPML 300 GFLGGGFPPN IPFQFLPSSY LTCRPTMQDP SLSVSNGNLL SPSTSCGLEN RGSPILGKHP 360 RESTGFEEMH VGKYILVPRT VRLDETEAAS KCNVLGVISE KVSISPEVAG FKGLEPNFGS 420 NHILESNLAS LSHPQTSEER I

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MDGCDSLKRR DPAIKLFGRK IPLPESQIPT KPISSEITDA VKNPDFYLGL SNSKEEHKVC  60
GESNGEIVKF KSKEEQSEAG GTEQEEQEKA FKKPDKIIPC PRCNSLDTKF CYFNNYNVNQ  120
PRHFCKDCQR YWTAGGMMRN VPVGAGRRKN KQFSSQYRQI LVSPGGNPIT KIETTDSVNN  180
QIASPVGSGI VLKFDTEPPV CESMETMLQL GGQKNVKTAG IGGHEPEQSD SRASASATPG  240
NRSHDLTVNV LTKEQATPQG SLPFYPFPPW SFPMNAGLSG IAAENGGNTS RIQLFPTPML  300
GFLGGGFPPN IPFQFLPSSY LTCRPTMQDP SLSVSNGNLL SPSTSCGLEN RGSPILGKHP  360
RESTGFEEMH VGKYILVPRT VRLDETEAAS KCNVLGVISE KVSISPEVAG FKGLEPNFGS  420
NHILESNLAS LSHPQTSEER I

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010553790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010553790.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	A0A1Q3D141	1e-113	A0A1Q3D141_CEPFO; Zf-Dof domain-containing protein
STRING	XP_010553790.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15591	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-52	cycling DOF factor 2