PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553699.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 368aa    MW: 40999.5 Da    PI: 7.7894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553699.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ede+l+  ++++G g+W+++++  g+ R++k+c++rw +yl
   XP_010553699.1 14 KGLWSPDEDEKLLSHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding46.48.9e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ l+++++  lG++ W+ Ia++++ gRt++++k+ w++
   XP_010553699.1  67 RGAFSPDEENLIIELHSILGNR-WSQIAARLP-GRTDNEIKNLWNS 110
                      89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-26664IPR009057Homeodomain-like
PROSITE profilePS5129417.972961IPR017930Myb domain
SuperFamilySSF466895.24E-2912108IPR009057Homeodomain-like
SMARTSM007173.7E-121363IPR001005SANT/Myb domain
PfamPF002496.0E-151461IPR001005SANT/Myb domain
CDDcd001674.52E-111761No hitNo description
PROSITE profilePS5129424.78462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-2565116IPR009057Homeodomain-like
SMARTSM007174.9E-1366114IPR001005SANT/Myb domain
PfamPF002498.1E-1467110IPR001005SANT/Myb domain
CDDcd001675.83E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPD EDEKLLSHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SPDEENLIIE LHSILGNRWS QIAARLPGRT DNEIKNLWNS CIKKRLRERG  120
IDPNTHKPLS EAGNNGDEDK KTRTATMNKS KPSFVCNELK LVNPSQSSSS ATNQEFYVER  180
TSDMAEYFAF QKLNFSSNLG LTVTTDASLS SMLSSQFNTA FQTPICMKQS VNLPTENSSS  240
ASGGNHHVKV APTWEVISSL NNGGELQTNS SSSFFDNGGF SWALADSSTL VKANNSSFEN  300
TKWSEYGLDT PFFAGSNVQN QSSQPIYVGS MVKPETDYLT NNDSNSSIDL WSQSQHDFHE  360
TVPFGQTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27121165108B-MYB
1h8a_C1e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553699.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553699.10.0PREDICTED: transcription factor MYB86-like isoform X1
RefseqXP_019059266.10.0PREDICTED: transcription factor MYB86-like isoform X2
SwissprotQ8VZQ21e-147MYB61_ARATH; Transcription factor MYB61
TrEMBLV4L0S41e-156V4L0S4_EUTSA; Uncharacterized protein
STRINGXP_010553699.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-145myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]