PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553681.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 398aa    MW: 41896.6 Da    PI: 6.5128
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553681.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.51.6e-40312023128
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                     ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++        
  XP_010553681.1  31 PAKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNVSLRSSGSTLSAPssksaply 125
                     689*****************************************************************999888888888885555566677888 PP

             TCP  89 ............................kaaksaakskksqksaasalnlakesr........akararare.rtre 128
                                                 ++ +++++++++q+ aa+a++ a+e           ++r r+ + ++++
  XP_010553681.1 126 galglsqhhhqydeqvsafgghappfiwSHLQQQQHHNQNQRLAAAASDQAEEGIpgadgenfGRKRHRSDDlSKEN 202
                     88888888888899999999877766664444444444444444433444443335555444445555555533333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-4135203IPR005333Transcription factor, TCP
PROSITE profilePS5136928.7823690IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDLADVRSND SSASGSGGGG SAATTSTAVV PAKRSTKDRH TKVDGRGRRI RMPALCAARV  60
FQLTRELGHK SDGETIEWLL QQAEPAIIAA TGTGTIPANF SSLNVSLRSS GSTLSAPSSK  120
SAPLYGALGL SQHHHQYDEQ VSAFGGHAPP FIWSHLQQQQ HHNQNQRLAA AASDQAEEGI  180
PGADGENFGR KRHRSDDLSK ENDYRNQNNQ TDPVNKSLKN SDMSSAEAAL WALTPGSRAT  240
GNTFWMLPVS AAAANPSASG SGPNPVTSSS TAAGHRAQMW PFANPTPPXX XXPPKAATVA  300
QFVAGTGYRF PMDQYRGSAL QLGSILSQPQ PTHNLGLGMS DSNLGMLAAL NAAYARPGPN  360
ANANADQMNN NAVEENSQPQ QSGADDDDDS RDEDSNSS
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553681.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553681.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5181e-135TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A1J3H9R61e-137A0A1J3H9R6_NOCCA; Transcription factor TCP8
STRINGXP_010553681.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-113TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]