PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010553597.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GeBP

Protein Properties

Length: 425aa MW: 46967.3 Da PI: 5.156

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010553597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	118.9	2.7e-37	98	197	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 lfqrlw++eDei lL+G++d+++++ s+++d+ afye++k++++++++k+qlveK+rrLKkK+++ vkk++sgke+sf+++hdq +fe+s XP_010553597.1 98 LFQRLWTDEDEIKLLRGFLDYTTSQQRsgvnSYHHDTAAFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNAVKKINSGKEISFKSPHDQASFEIS 192 79*****************77654444445556******************************************************** PP DUF573 93 kkiWg 97 +kiW XP_010553597.1 193 RKIWS 197 **6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.7E-33	99	197	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MDSEQDDDAD TQIGGEDSSE IGNDHEEDME VDPGEEYVNS PLRSSTAAIS VIPAPLTTIS 60 SAVAVAVPAS TAVTFIAVAV DPDPEIAQKP PADESRRLFQ RLWTDEDEIK LLRGFLDYTT 120 SQQRSGVNSY HHDTAAFYEQ IKSKLQLDFN KNQLVEKLRR LKKKYRNAVK KINSGKEISF 180 KSPHDQASFE ISRKIWSATG KIIGFEDNVL DDEENHNHNI TATTAASSNF NLTHCSNPNF 240 EVKIEDGVER KMGSSSSNRW KKRSRTKLER IEEERRFESD GIGPIVNNVE LSGGGAGDNG 300 NHGGGGNVTV AAMVEETLRS CLTPMLREFM NGTTPVNIPN YGGSRGIIPP LILPPFPSNL 360 ATFGFDGMVG LSRIHGQVGE RVDEKWRKQQ ILELEVYSRR LELVQDHIRL ALAELRATGC 420 GGRNG

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MDSEQDDDAD TQIGGEDSSE IGNDHEEDME VDPGEEYVNS PLRSSTAAIS VIPAPLTTIS  60
SAVAVAVPAS TAVTFIAVAV DPDPEIAQKP PADESRRLFQ RLWTDEDEIK LLRGFLDYTT  120
SQQRSGVNSY HHDTAAFYEQ IKSKLQLDFN KNQLVEKLRR LKKKYRNAVK KINSGKEISF  180
KSPHDQASFE ISRKIWSATG KIIGFEDNVL DDEENHNHNI TATTAASSNF NLTHCSNPNF  240
EVKIEDGVER KMGSSSSNRW KKRSRTKLER IEEERRFESD GIGPIVNNVE LSGGGAGDNG  300
NHGGGGNVTV AAMVEETLRS CLTPMLREFM NGTTPVNIPN YGGSRGIIPP LILPPFPSNL  360
ATFGFDGMVG LSRIHGQVGE RVDEKWRKQQ ILELEVYSRR LELVQDHIRL ALAELRATGC  420
GGRNG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010553597.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010553597.1	0.0	PREDICTED: probable transcription factor At3g04930
Swissprot	F4K5T4	1e-105	STKLU_ARATH; Probable transcription factor At5g28040
STRING	XP_010553597.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.1	6e-93	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]