PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553557.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 296aa    MW: 32655.8 Da    PI: 7.6072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553557.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19107157256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr++  +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  XP_010553557.1 107 LYRGVRQRQ-WGKWVAEIRLPQN---RIRVWLGTYDTAEAAAYAYDRAAYKLRGE 157
                     59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.75E-16106166No hitNo description
PROSITE profilePS5103223.393107164IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22107164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-30107165IPR001471AP2/ERF domain
SMARTSM003802.1E-36107170IPR001471AP2/ERF domain
PRINTSPR003673.4E-10108119IPR001471AP2/ERF domain
PfamPF008476.8E-13108157IPR001471AP2/ERF domain
PRINTSPR003673.4E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEETTDLIQL DFYPNIADIG YSLSQIILTG GANTLDSIFS HCTSSFTATT APPPLGSSVY  60
LRQRDLLHKF YQENNRVPHH TTATPFYPSD HRMGPTAAVA GGKKKKLYRG VRQRQWGKWV  120
AEIRLPQNRI RVWLGTYDTA EAAAYAYDRA AYKLRGEYAR LNFPNLKDPS ELLGLADSSK  180
LLALKSAVDA KIQAICQRVR KERAKKRAKA AAEKATVENT PERLPSPSAV IAGENYWVTS  240
EVSDDGLFWN SESGSPTVSD EGATPGTAAA EAEADGYLLA RMPSFDPELI WEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19104164263ATERF1
3gcc_A2e-19104164263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209AKKRAKA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553557.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553557.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W27e-92ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLD7KSA83e-97D7KSA8_ARALL; Uncharacterized protein
STRINGXP_010553557.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-60ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]