PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010553450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | WRKY | ||||||||
Protein Properties | Length: 527aa MW: 57949.5 Da PI: 5.9035 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.9 | 6.6e-31 | 296 | 354 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ XP_010553450.1 296 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDKSILITTYEGNHNHP 354 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.2E-34 | 280 | 356 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-28 | 288 | 356 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.838 | 290 | 356 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-37 | 295 | 355 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-27 | 297 | 354 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MDRGWGGLTL DSSTPDLISS NSHGKFTDSP VADADQKTEM FRFPVSISGF RDREYELNSS 60 SGDNDRKVPG EVDFFSDHKS RVLRCGEDDC LRVKEEDKDY RTDVNTGLNL LTTANNNTGS 120 DQSVVDDGMF SDTEEERRAK NDVAELQVQL QRMNSENRKL KEMLDEVTKN YNSLHTQLAL 180 MQRQRNIPNK VIDGKPWESQ CIGAGPSRAD DESNSMLEER RRSPENNVEL ERDNDPRGEK 240 RLAQEESPET ESRSLWNSPN KLQKVNNNPQ IDQSGEAMMR KARVSVRARS EAPMISDGCQ 300 WRKYGQKMAK GNPCPRAYYR CTMATGCPVR KQVQRCAEDK SILITTYEGN HNHPLPPAAV 360 AMASTTTAAA TMLLSGSTSS HEGLMNPANL LARAILPSSS STASIATISA SAPFPTVTLD 420 LTHAPPPPSG PGNHPLVRSP PQQMMNLPPN LLPQVVGRTL YNQSKFSGVQ FSGNFDGCQI 480 APPSYALVDT VNALTKDPNF TAALATMISS MINGSSHQDG EGNPKIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 282 | 358 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010553450.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553450.1 | 0.0 | PREDICTED: WRKY transcription factor 6-like | ||||
Swissprot | Q9C519 | 0.0 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A078FIZ3 | 0.0 | A0A078FIZ3_BRANA; BnaA09g13370D protein | ||||
STRING | XP_010553450.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-177 | WRKY family protein |