PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010553392.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | B3 | ||||||||
Protein Properties | Length: 219aa MW: 25551.5 Da PI: 7.6858 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 98.1 | 5.4e-31 | 46 | 154 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k ltpsdv+k++rlv+pk++ae+h g e++ l +ede+g W+++++y+++s++yvltkGW +Fvk+++L +gD+v F+ XP_010553392.1 46 FEKPLTPSDVGKLNRLVIPKQHAERHfplananananaG--AEKGHVLCFEDEEGWPWRFRYSYWNSSQSYVLTKGWCRFVKEKHLGAGDVVFFH 138 99*****************************99999633..457789************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++++++l++++ r+ XP_010553392.1 139 RHRTDCRRLFIGWQRR 154 9888*******99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-39 | 40 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.45E-32 | 42 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.70E-29 | 44 | 145 | No hit | No description |
Pfam | PF02362 | 9.7E-29 | 46 | 154 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.7E-24 | 46 | 155 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.689 | 46 | 155 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MSINQYTTDL TDHTFMWQHQ QQYHMMESNL QNDIVFDEDT TKEPLFEKPL TPSDVGKLNR 60 LVIPKQHAER HFPLANANAN ANAGAEKGHV LCFEDEEGWP WRFRYSYWNS SQSYVLTKGW 120 CRFVKEKHLG AGDVVFFHRH RTDCRRLFIG WQRRGGAIGR TSSSSSESSR RLRGHIQYYD 180 QPEYLRHAGK TLESQSVGMT NSKTLRLFGV DMECQLESD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 6e-47 | 43 | 166 | 11 | 129 | DNA-binding protein RAV1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010553392.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553392.1 | 1e-167 | PREDICTED: B3 domain-containing protein At2g36080 | ||||
Swissprot | Q8GYJ2 | 3e-76 | Y2608_ARATH; B3 domain-containing protein At2g36080 | ||||
TrEMBL | A0A397Z9X0 | 7e-76 | A0A397Z9X0_BRACM; Uncharacterized protein | ||||
STRING | XP_010553392.1 | 1e-167 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.1 | 2e-74 | B3 family protein |
Publications ? help Back to Top | |||
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