PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010553336.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GRF | ||||||||
Protein Properties | Length: 384aa MW: 42174.6 Da PI: 9.1573 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.9 | 5.7e-26 | 147 | 190 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e XP_010553336.1 147 DPEPGRCRRTDGKKWRCSRDVVVGHKYCERHMHRGRNRSRKPVE 190 79***************************************987 PP | |||||||
2 | QLQ | 51.9 | 2.4e-18 | 78 | 113 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F+++Q+q+L+ Q+l+y+y++a++ vP+eLl++i+k XP_010553336.1 78 FFSWSQWQELELQALIYRYMLAGAAVPHELLLPIKK 113 6*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.2E-11 | 77 | 113 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.658 | 78 | 113 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.1E-12 | 79 | 111 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.947 | 147 | 191 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.2E-22 | 148 | 190 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006995 | Biological Process | cellular response to nitrogen starvation | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0051365 | Biological Process | cellular response to potassium ion starvation | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MDLQLKQWRS QQQQQQNESE TQASAAKIPK LVFDQSQTAT SAALPLFAHE PEATSSKLAS 60 LSGFALESSS RSPKMGGFFS WSQWQELELQ ALIYRYMLAG AAVPHELLLP IKKSLLHHSP 120 SYFLHHPLQH LSPHYQPPWY WGRATMDPEP GRCRRTDGKK WRCSRDVVVG HKYCERHMHR 180 GRNRSRKPVE IPTPSATNAV TATVNFGRGG LVEGNTNNNS NGQSFFFSAS SQSSQLLNIS 240 QSCTDTKTLN NNKRPYEYSH SGFGDNTSDS GHILRSFFDD WPRGSGGGGG DATSSSTMSS 300 ATCLSISMPG NNPSDVSLKL STGNGEETNG NGNNGREHQS RWDGTHHHHQ MGGPLAEALR 360 SSTVATSSPT SVLHQLGIAT KTFH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010553336.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553336.1 | 0.0 | PREDICTED: growth-regulating factor 3 | ||||
Swissprot | Q9SJR5 | 1e-143 | GRF3_ARATH; Growth-regulating factor 3 | ||||
TrEMBL | M4E2R5 | 1e-148 | M4E2R5_BRARP; Uncharacterized protein | ||||
STRING | XP_010553336.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1926 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 1e-112 | growth-regulating factor 4 |
Publications ? help Back to Top | |||
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