PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553252.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 293aa    MW: 32674.1 Da    PI: 5.7213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-082873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a +++ ++   +W ++a++++ g+t  +++  ++ 
   XP_010553252.1 28 NWTAEENKKFENALALFDKDtpdRWYRVAAMLP-GKTVGDVIKQYRE 73
                     8********************************.******9999986 PP
2Myb_DNA-binding48.61.9e-15144188347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
   XP_010553252.1 144 PWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 188
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.262479IPR017884SANT domain
SMARTSM007171.0E-92577IPR001005SANT/Myb domain
SuperFamilySSF466893.66E-112781IPR009057Homeodomain-like
CDDcd001671.71E-72874No hitNo description
PfamPF002494.8E-72873IPR001005SANT/Myb domain
PROSITE profilePS5129421.022137193IPR017930Myb domain
SuperFamilySSF466891.59E-17138192IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-18140192IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.0E-13141188IPR009057Homeodomain-like
SMARTSM007178.7E-14141191IPR001005SANT/Myb domain
PfamPF002497.6E-13144188IPR001005SANT/Myb domain
CDDcd001679.19E-12144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSREIEVLSP ASYLQTSNWL FQESRGTNWT AEENKKFENA LALFDKDTPD RWYRVAAMLP  60
GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YASDSFTLDW GGGGCDGSVA GNNSFNVNGY  120
YYFAGGKRSS GGRTPEQERK KGVPWTEEEH RQFLMGLKKY GKGDWRNIAR NFVTTRTPTQ  180
VASHAQKYFI RQLNGGKDKR RSSIHDITTD TVNAPDPPAA NADAKGDTTF SPWAAAQHQR  240
LAEENADASA DFGQNAFSNN FLGMPSSMYM TKSQEHSVLN ASQFCSYNEF LLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-162693875RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553252.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-94DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLR0FXY91e-148R0FXY9_9BRAS; Uncharacterized protein
STRINGXP_010553252.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-150MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]