PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010553151.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | B3 | ||||||||
Protein Properties | Length: 792aa MW: 87398.3 Da PI: 7.5809 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.8 | 9.5e-19 | 287 | 386 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++ ++e+ l++ d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_010553151.1 287 FEKVLSASDAGRIGRLVLPKACAEAYfpSITQPEGLPLKIHDTKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTE-PEGK 379 99**************************666677788***************9989999999***9.********************654.7787 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_010553151.1 380 LVMGFRK 386 8887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-29 | 280 | 389 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-19 | 284 | 387 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.41E-22 | 285 | 386 | No hit | No description |
SMART | SM01019 | 1.3E-19 | 287 | 387 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-16 | 287 | 386 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.039 | 287 | 388 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.181 | 515 | 565 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 7.2E-13 | 520 | 562 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MSEDQIHLQA LRLLHFTAHG ILVNVFLLSY FRSAYEQSIF CDVFHTNESG WRGCSSCDKR 60 LHCGCIAARF MIELLDNGGV SCISCAKKSG ILPVNVTDDS NGIGVLKLDS VGELCSLAAV 120 EHTGGAGAFE RTNLKQLLQF QSIGPRHSVL QVKQEETLLP AKLDVLRQKD EEKDMHELSA 180 QPNLSISLGP SLKPSPFHDV FIDERGKTTS IFQLAPRSRQ LLPKPAKSAP TAGMEANGSL 240 VSQIHVARPP PEGRGKTQLL PRYWPRITDQ ELQQISGHSN SKIIPLFEKV LSASDAGRIG 300 RLVLPKACAE AYFPSITQPE GLPLKIHDTK GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS 360 MQLQAGDTVT FSRTEPEGKL VMGFRKATNS TLSQSFKGSS DTHLSVFNNS NLASGDINWL 420 KLEKPDDMTK ENLLLQSVLV PARKRARNIG CKSKRLLIDS LDALELRLTW EEAQELLRPS 480 PSAIPSIVTI EDHDFEEYEE PPVFGKRSLF VSRPTGEYEQ WAQCDACGKW RRLPVETLLP 540 PKWSCTDNIS DPGRSSCSAP DELSPREQET LIRLSKEYKR KRMASSNEKL NQEKETSSAL 600 ETLANAAAVT NGESAGEGGV ITVAATTKHP RHRPGCSCIV CSQPPSGKGK HKPSCTCTVC 660 EAVKRRFKTL MMRKRKNQTT MTTKEEEGET GQASQQTISE SRDETEVESR PKNEELMVTP 720 GGGGNIDLNY NPGSKEGPAR VSMMSLLQAA TFPLESYLKQ KNVTSAGEQQ QTVEMVSMEL 780 GSTSSAAHDL TS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-66 | 265 | 390 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010553151.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553150.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A1J3CN34 | 0.0 | A0A1J3CN34_NOCCA; B3 domain-containing transcription repressor VAL2 | ||||
STRING | XP_010553150.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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