PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553150.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 799aa    MW: 87823.6 Da    PI: 7.6214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553150.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.7e-19294393198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++  ++ ++e+  l++ d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_010553150.1 294 FEKVLSASDAGRIGRLVLPKACAEAYfpSITQPEGLPLKIHDTKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTE-PEGK 386
                     99**************************666677788***************9989999999***9.********************654.7787 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_010553150.1 387 LVMGFRK 393
                     8887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-29287396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-19291394IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-22292393No hitNo description
PROSITE profilePS5086311.039294395IPR003340B3 DNA binding domain
SMARTSM010191.3E-19294394IPR003340B3 DNA binding domain
PfamPF023629.2E-16294393IPR003340B3 DNA binding domain
PROSITE profilePS5105014.181522572IPR011124Zinc finger, CW-type
PfamPF074967.3E-13527569IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MESKVCMNAQ CGAASTSGEW RRGWSTRSGE LVLLCDKCGS AYEQSIFCDV FHTNESGWRG  60
CSSCDKRLHC GCIAARFMIE LLDNGGVSCI SCAKKSGILP VNVTDDSNGI GVLKLDSVGE  120
LCSLAAVEHT GGAGAFERTN LKQLLQFQSI GPRHSVLQVK QEETLLPAKL DVLRQKDEEK  180
DMHELSAQPN LSISLGPSLK PSPFHDVFID ERGKTTSIFQ LAPRSRQLLP KPAKSAPTAG  240
MEANGSLVSQ IHVARPPPEG RGKTQLLPRY WPRITDQELQ QISGHSNSKI IPLFEKVLSA  300
SDAGRIGRLV LPKACAEAYF PSITQPEGLP LKIHDTKGKE WVFQFRFWPN NNSRMYVLEG  360
VTPCIQSMQL QAGDTVTFSR TEPEGKLVMG FRKATNSTLS QSFKGSSDTH LSVFNNSNLA  420
SGDINWLKLE KPDDMTKENL LLQSVLVPAR KRARNIGCKS KRLLIDSLDA LELRLTWEEA  480
QELLRPSPSA IPSIVTIEDH DFEEYEEPPV FGKRSLFVSR PTGEYEQWAQ CDACGKWRRL  540
PVETLLPPKW SCTDNISDPG RSSCSAPDEL SPREQETLIR LSKEYKRKRM ASSNEKLNQE  600
KETSSALETL ANAAAVTNGE SAGEGGVITV AATTKHPRHR PGCSCIVCSQ PPSGKGKHKP  660
SCTCTVCEAV KRRFKTLMMR KRKNQTTMTT KEEEGETGQA SQQTISESRD ETEVESRPKN  720
EELMVTPGGG GNIDLNYNPG SKEGPARVSM MSLLQAATFP LESYLKQKNV TSAGEQQQTV  780
EMVSMELGST SSAAHDLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-662723972127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553150.10.0PREDICTED: B3 domain-containing transcription repressor VAL2
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A1J3CN340.0A0A1J3CN34_NOCCA; B3 domain-containing transcription repressor VAL2
STRINGXP_010553150.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72032639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]