PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553060.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 369aa    MW: 40431.1 Da    PI: 5.915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-184590147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v ++G+++W++Iar ++ gR++k+c++rw + 
   XP_010553060.1 45 KGPWSPEEDAVLSQLVSKFGPRNWSLIARGIP-GRSGKSCRLRWCNQ 90
                     79******************************.***********985 PP
2Myb_DNA-binding53.45.9e-1797141147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd ++++a++ +G++ W+ Ia+ ++ gRt++ +k++w++ 
   XP_010553060.1  97 RNSFTGEEDRKIIEAHTIYGNK-WAVIAKLLP-GRTDNAIKNHWNST 141
                      7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.5524095IPR017930Myb domain
SuperFamilySSF466895.24E-3143138IPR009057Homeodomain-like
SMARTSM007171.5E-154493IPR001005SANT/Myb domain
PfamPF002493.4E-174590IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-264698IPR009057Homeodomain-like
CDDcd001676.56E-154789No hitNo description
SMARTSM007172.1E-1696144IPR001005SANT/Myb domain
PROSITE profilePS5129421.0296146IPR017930Myb domain
PfamPF002491.9E-1497141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2399145IPR009057Homeodomain-like
CDDcd001671.25E-1299142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEGACERRPE MVGTVAGEVE DSGAGEDMAA FSGEGASGGG KERVKGPWSP EEDAVLSQLV  60
SKFGPRNWSL IARGIPGRSG KSCRLRWCNQ LDPSVKRNSF TGEEDRKIIE AHTIYGNKWA  120
VIAKLLPGRT DNAIKNHWNS TLRRRYIMEL QKATMGTENV AEDSVFDEAK ASSEETLSSG  180
GGCHTAPKET TSMEMSEEKC QDPPTLFRPV ARMSAFNVYN HMDGSKTASS LMSGQHQMEE  240
SKQDNPVLRL LEGAYNERFV PQQCGRGCCS NLGDTYPRNS VLGPEFVDYS EPETSPSFEL  300
VAIATDISSL AWLRSGLENS SARVMDDAAS RLRPSGSRGR NLGHYQNNKV DIHHGISDRG  360
KEMANVLSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-41391451107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553060.10.0PREDICTED: transcription factor MYB44
SwissprotQ425751e-139MYB1_ARATH; Transcription factor MYB1
TrEMBLV4LZ711e-150V4LZ71_EUTSA; Uncharacterized protein
STRINGXP_010553060.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-140myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]