PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553047.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 542aa    MW: 60430.9 Da    PI: 8.9288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.6e-1874120148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ l +av+++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   XP_010553047.1  74 KGGWTPEEDDTLRKAVEMYKGKSWKKIAEFFP-DRTEVQCLHRWQKVL 120
                      688*****************************.************986 PP
2Myb_DNA-binding58.31.7e-18126172148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT  Ed+++v++v+q G++ W++Iar ++ gR +kqc++rw+++l
   XP_010553047.1 126 KGPWTRKEDDKIVELVQQNGPRKWSLIARSLP-GRIGKQCRERWHNHL 172
                      79******************************.*************97 PP
3Myb_DNA-binding56.94.9e-18180221346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE++ lv+a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   XP_010553047.1 180 AWTEEEELALVNAHRIYGNR-WAEIAKALP-GRTDNAIKNHWNS 221
                      7*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.41969120IPR017930Myb domain
SMARTSM007176.8E-1673122IPR001005SANT/Myb domain
PfamPF002499.8E-1774120IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-1675130IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2176132IPR009057Homeodomain-like
CDDcd001677.74E-1477120No hitNo description
PROSITE profilePS5129431.051121176IPR017930Myb domain
SuperFamilySSF466893.56E-30123219IPR009057Homeodomain-like
SMARTSM007174.8E-16125174IPR001005SANT/Myb domain
PfamPF002491.2E-16126172IPR001005SANT/Myb domain
CDDcd001678.54E-14128172No hitNo description
Gene3DG3DSA:1.10.10.603.1E-26133179IPR009057Homeodomain-like
PROSITE profilePS5129423.107177227IPR017930Myb domain
SMARTSM007171.1E-16177225IPR001005SANT/Myb domain
PfamPF002496.7E-16180221IPR001005SANT/Myb domain
CDDcd001677.16E-14180223No hitNo description
Gene3DG3DSA:1.10.10.602.0E-23180227IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSHSSNPAAC SRENETGEVR IEDQCMENKQ LTAASSSSMS EGSGNSLLKT PGAASPATAF  60
HTHRRTTGPI RRAKGGWTPE EDDTLRKAVE MYKGKSWKKI AEFFPDRTEV QCLHRWQKVL  120
NPELVKGPWT RKEDDKIVEL VQQNGPRKWS LIARSLPGRI GKQCRERWHN HLNPDIKKYA  180
WTEEEELALV NAHRIYGNRW AEIAKALPGR TDNAIKNHWN SSLKKKLDLY LATDNLPPAA  240
KYGFVNGIRD HGVADTARDS TKPSSSCQNK DSDSVAQTSS GTTDVNKPDE DGRDHTNSSA  300
PLEEAAAASS RIRINENARS PAVEYKSRLH NSEPFPENVV NSNSRGYEDR LAHTEEEGFG  360
TPEHGFLFYR PMVDLYLSSE PDFQRGYYAY GCGRSPGSSP VSFFTPPCTK SSGSFASRSP  420
ESYLREAART FPNTPSIFRK RRKSVNVGKM DDTSSSDMEA DKSENFEDSS EKSPAGREGL  480
SERSGYQDGK NLGSKGSGCD VSPPYRLRSK RTAVFKSRQL EFLPEKENPG VTKTKSSQVT  540
YI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-69732275159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-69732275159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553047.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553047.10.0PREDICTED: transcription factor RAX1-like isoform X3
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLR0FDT20.0R0FDT2_9BRAS; Uncharacterized protein
STRINGXP_010553045.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]