PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010553046.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 550aa MW: 61321.9 Da PI: 8.3335 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.8e-18 | 90 | 136 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l +av+++ g++Wk+Ia+ ++ Rt+ qc +rwqk+l XP_010553046.1 90 KGGWTPEEDDTLRKAVEMYKGKSWKKIAEFFP-DRTEVQCLHRWQKVL 136 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.7e-18 | 142 | 188 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed+++v++v+q G++ W++Iar ++ gR +kqc++rw+++l XP_010553046.1 142 KGPWTRKEDDKIVELVQQNGPRKWSLIARSLP-GRIGKQCRERWHNHL 188 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 56.8 | 5e-18 | 196 | 237 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE++ lv+a++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_010553046.1 196 AWTEEEELALVNAHRIYGNR-WAEIAKALP-GRTDNAIKNHWNS 237 7*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.419 | 85 | 136 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-16 | 89 | 138 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 90 | 136 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.61E-16 | 91 | 146 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 92 | 148 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-13 | 93 | 136 | No hit | No description |
PROSITE profile | PS51294 | 31.051 | 137 | 192 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.63E-30 | 139 | 235 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-16 | 141 | 190 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 142 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-13 | 144 | 188 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 149 | 195 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.107 | 193 | 243 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 193 | 241 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-16 | 196 | 237 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.33E-14 | 196 | 239 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 196 | 243 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 550 aa Download sequence Send to blast |
MSHSSNPAAC SRENVGLRLE LESCCWSCDR ETGEVRIEDQ CMENKQLTAA SSSSMSEGSG 60 NSLLKTPGAA SPATAFHTHR RTTGPIRRAK GGWTPEEDDT LRKAVEMYKG KSWKKIAEFF 120 PDRTEVQCLH RWQKVLNPEL VKGPWTRKED DKIVELVQQN GPRKWSLIAR SLPGRIGKQC 180 RERWHNHLNP DIKKYAWTEE EELALVNAHR IYGNRWAEIA KALPGRTDNA IKNHWNSSLK 240 KKLDLYLATD NLPPAAKYGF VNGIRDHGVA DTARDSTKPS SSCQNKDSDS VAQTSSGTTD 300 VNKPDEDGRD HTNSSAPLEE AAAASSRIRI NENARSPAVE YKSRLHNSEP FPENVVNSNS 360 RGYEDRLAHT EEEGFGTPEH GFLFYRPMVD LYLSSEPDFQ RGYYAYGCGR SPGSSPVSFF 420 TPPCTKSSGS FASRSPESYL REAARTFPNT PSIFRKRRKS VNVGKMDDTS SSDMEADKSE 480 NFEDSSEKSP AGREGLSERS GYQDGKNLGS KGSGCDVSPP YRLRSKRTAV FKSRQLEFLP 540 EKENPGTGSM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-69 | 89 | 243 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-69 | 89 | 243 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010553046.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553046.1 | 0.0 | PREDICTED: transcription factor RAX1-like isoform X2 | ||||
Swissprot | Q6R032 | 0.0 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | R0FDT2 | 0.0 | R0FDT2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010553045.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G02320.2 | 0.0 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
---|---|---|---|
|