PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553045.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 558aa    MW: 62282 Da    PI: 8.5694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.9e-1890136148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ l +av+++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   XP_010553045.1  90 KGGWTPEEDDTLRKAVEMYKGKSWKKIAEFFP-DRTEVQCLHRWQKVL 136
                      688*****************************.************986 PP
2Myb_DNA-binding58.31.8e-18142188148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT  Ed+++v++v+q G++ W++Iar ++ gR +kqc++rw+++l
   XP_010553045.1 142 KGPWTRKEDDKIVELVQQNGPRKWSLIARSLP-GRIGKQCRERWHNHL 188
                      79******************************.*************97 PP
3Myb_DNA-binding56.85.1e-18196237346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE++ lv+a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   XP_010553045.1 196 AWTEEEELALVNAHRIYGNR-WAEIAKALP-GRTDNAIKNHWNS 237
                      7*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.41985136IPR017930Myb domain
SMARTSM007176.8E-1689138IPR001005SANT/Myb domain
PfamPF002491.0E-1690136IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-1691146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2192148IPR009057Homeodomain-like
CDDcd001671.13E-1393136No hitNo description
PROSITE profilePS5129431.051137192IPR017930Myb domain
SuperFamilySSF466893.71E-30139235IPR009057Homeodomain-like
SMARTSM007174.8E-16141190IPR001005SANT/Myb domain
PfamPF002491.2E-16142188IPR001005SANT/Myb domain
CDDcd001671.18E-13144188No hitNo description
Gene3DG3DSA:1.10.10.603.2E-26149195IPR009057Homeodomain-like
PROSITE profilePS5129423.107193243IPR017930Myb domain
SMARTSM007171.1E-16193241IPR001005SANT/Myb domain
CDDcd001671.03E-13196239No hitNo description
PfamPF002496.9E-16196237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-23196243IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MSHSSNPAAC SRENVGLRLE LESCCWSCDR ETGEVRIEDQ CMENKQLTAA SSSSMSEGSG  60
NSLLKTPGAA SPATAFHTHR RTTGPIRRAK GGWTPEEDDT LRKAVEMYKG KSWKKIAEFF  120
PDRTEVQCLH RWQKVLNPEL VKGPWTRKED DKIVELVQQN GPRKWSLIAR SLPGRIGKQC  180
RERWHNHLNP DIKKYAWTEE EELALVNAHR IYGNRWAEIA KALPGRTDNA IKNHWNSSLK  240
KKLDLYLATD NLPPAAKYGF VNGIRDHGVA DTARDSTKPS SSCQNKDSDS VAQTSSGTTD  300
VNKPDEDGRD HTNSSAPLEE AAAASSRIRI NENARSPAVE YKSRLHNSEP FPENVVNSNS  360
RGYEDRLAHT EEEGFGTPEH GFLFYRPMVD LYLSSEPDFQ RGYYAYGCGR SPGSSPVSFF  420
TPPCTKSSGS FASRSPESYL REAARTFPNT PSIFRKRRKS VNVGKMDDTS SSDMEADKSE  480
NFEDSSEKSP AGREGLSERS GYQDGKNLGS KGSGCDVSPP YRLRSKRTAV FKSRQLEFLP  540
EKENPGVTKT KSSQVTYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-69892435159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-69892435159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553045.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553045.10.0PREDICTED: transcription factor RAX1-like isoform X1
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLR0FDT20.0R0FDT2_9BRAS; Uncharacterized protein
STRINGXP_010553045.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]