PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010552881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 25460.4 Da PI: 6.9035 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 6.1e-14 | 98 | 142 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky XP_010552881.1 98 PWTENEHKLFLIGLKKYGKGDWRSISRNVVVTRTPTQVASHAQKY 142 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.969 | 1 | 51 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.9E-5 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.44E-11 | 4 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.69E-5 | 6 | 51 | No hit | No description |
PROSITE profile | PS51294 | 20.05 | 91 | 147 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-16 | 92 | 148 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.8E-17 | 94 | 146 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.4E-11 | 95 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-10 | 95 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-12 | 98 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.73E-8 | 98 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAANQWTRTE DKMFEESLVI FPETLPDRWE RIAEKLRKSP AEVREHYEAL VHDVSEIDSG 60 RVEMPDYVDD SAASWDSAPA QISFRAKHGD TEKKKGTPWT ENEHKLFLIG LKKYGKGDWR 120 SISRNVVVTR TPTQVASHAQ KYFLRQTSMK KERKRSSIHD ITITTVDNNN NNNMVAAMSG 180 PEWTWSAQPE SAQEQSPLPQ LPQSDFHGQA QFPRDQSFRF P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010552881.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010552881.1 | 1e-166 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-55 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A397ZYQ0 | 3e-99 | A0A397ZYQ0_BRACM; Uncharacterized protein | ||||
STRING | XP_010552881.1 | 1e-165 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 9e-90 | MYB family protein |
Publications ? help Back to Top | |||
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