PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552878.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ZF-HD
Protein Properties Length: 344aa    MW: 36499.3 Da    PI: 7.807
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.44e-3456112358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                     +v YkeClkNhAa+lGgha+DGCgEfmps++ + +++++lkCaACgCHRnFHRr+++
  XP_010552878.1  56 TVAYKECLKNHAAALGGHALDGCGEFMPSPSFNpSDPTSLKCAACGCHRNFHRRDPD 112
                     689******************************9********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-1553106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.3E-2857111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.27859110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.5E-3159110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.6E-24193262IPR009057Homeodomain-like
SuperFamilySSF466891.43E-14194261IPR009057Homeodomain-like
TIGRFAMsTIGR015654.3E-23202258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDMTPITTTT TAAPTSPEPE PESEVLTRIQ PAKPISFSNG IIKRHHHLHH NHALVTVAYK  60
ECLKNHAAAL GGHALDGCGE FMPSPSFNPS DPTSLKCAAC GCHRNFHRRD PDPSAAAAAL  120
PTAHLSSAAA IEYQPHHRHH PPPPPLGHSR SPNSSSPPPI SSSYMLLALS GSNNNAGNSL  180
AFSDLNLGVN NLSTHQAPGS RKRXXXKFNQ FQKDKMHEFA ERMGWKMQKR DEEEIRDFCR  240
EIGVDKGVLK VWMHNNKNAS HRRDPFAGIG IGVRRSNNSE GNHNAAAAAS GGTNNNSNGD  300
GGGARGLGHD LHHHGGGDED GGGFDGDSSG ANGGNPNGSS SSPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-162002591675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552878.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552878.10.0PREDICTED: LOW QUALITY PROTEIN: zinc-finger homeodomain protein 10-like
SwissprotQ9LHF08e-89ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A1J3G0A21e-112A0A1J3G0A2_NOCCA; Zinc-finger homeodomain protein 9
STRINGXP_010552878.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-54homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]