PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010552868.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29533.1 Da PI: 9.708 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.4 | 6.8e-08 | 7 | 51 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+eE +++ +a + + + +W +Ia+ ++ g+t ++ + + XP_010552868.1 7 TWTKEENKKFERALAVHVEDtpdRWFKIASVIP-GKTVSDVMNQYI 51 6*****************99*************.*******99885 PP | |||||||
2 | Myb_DNA-binding | 39.9 | 9.6e-13 | 108 | 152 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + +t+ q+ s+ qky XP_010552868.1 108 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 152 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.908 | 3 | 58 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-9 | 4 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.44E-11 | 6 | 61 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-5 | 7 | 52 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.46E-8 | 7 | 53 | No hit | No description |
Pfam | PF00249 | 1.3E-6 | 7 | 51 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.78 | 101 | 157 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-15 | 102 | 156 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 104 | 156 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.7E-10 | 105 | 155 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-11 | 105 | 157 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.91E-9 | 108 | 152 | No hit | No description |
Pfam | PF00249 | 4.1E-10 | 108 | 152 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MMNRDTTWTK EENKKFERAL AVHVEDTPDR WFKIASVIPG KTVSDVMNQY IRLEEDVSDI 60 ESGRIPIPGY PLSSCRFDQA VSYRDLESYR KRANGSRGTE QERKKGVPWT EEEHRRFLLG 120 LLKYGKGDWR NISRNFVVSK TPTQVASHAQ KYYQRQLSGA KDKRRPSIHD ITTVNLLNAN 180 SSCDQNRPFP DGFLPQTQEK SVVFRDMGAE NVTFLGQSSL FPPSLSPYEA AFLDGIKFSG 240 QISYGSGAYS NIKSRNSVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-15 | 8 | 70 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010552868.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010552870.2 | 0.0 | PREDICTED: transcription factor DIVARICATA-like, partial | ||||
Swissprot | Q8S9H7 | 4e-74 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A397XQG4 | 1e-109 | A0A397XQG4_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CY37 | 1e-109 | M4CY37_BRARP; Uncharacterized protein | ||||
STRING | XP_010552868.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4340 | 26 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05790.1 | 1e-113 | MYB family protein |
Publications ? help Back to Top | |||
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