PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552851.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 468aa MW: 50322.4 Da PI: 5.2627

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552851.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.1e-40	139	199	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_010552851.1 139 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 199 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-31	130	196	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-32	141	197	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	143	197	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	145	181	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MSDPAIKLFG KTIPLPEMDA SPSGAASSSG GEVVDQRDQD PAPSPDSSLG EDNTREDSGG 60 GGGGGEEGGC GGEETESEKE IQEENVNDCG EEHGGESSSI QESGVASSPS DKVETPKPDA 120 AKTEEETDAS SQETKLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG 180 GTMRNVPVGA GRRKNKNSAS HLNRHVNISA AEAMQKPRTD LHHPNGTNLI TFGSDQLLCE 240 SMASGLNLAD KAKLKTRNGF CEPTEGLKIQ IPYENNGDTS SNPPSIEAGV NSSTPKAPCF 300 PGPQAWPYVW NGAPWTVLPF YPPPVYLSYP GVPPATWNGF PWMVQPNSPS GSGPNSPTLG 360 KHSRDENMAG PGTSSKETEP SSKEKSDPER SLWVPKTLRM DDPEEAAKSS IWKTLGIMNG 420 ERPETFRAFR SNKGKGAIAK ENPSPPRVSA LQANPAAMSR SVNFHERS

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MSDPAIKLFG KTIPLPEMDA SPSGAASSSG GEVVDQRDQD PAPSPDSSLG EDNTREDSGG  60
GGGGGEEGGC GGEETESEKE IQEENVNDCG EEHGGESSSI QESGVASSPS DKVETPKPDA  120
AKTEEETDAS SQETKLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG  180
GTMRNVPVGA GRRKNKNSAS HLNRHVNISA AEAMQKPRTD LHHPNGTNLI TFGSDQLLCE  240
SMASGLNLAD KAKLKTRNGF CEPTEGLKIQ IPYENNGDTS SNPPSIEAGV NSSTPKAPCF  300
PGPQAWPYVW NGAPWTVLPF YPPPVYLSYP GVPPATWNGF PWMVQPNSPS GSGPNSPTLG  360
KHSRDENMAG PGTSSKETEP SSKEKSDPER SLWVPKTLRM DDPEEAAKSS IWKTLGIMNG  420
ERPETFRAFR SNKGKGAIAK ENPSPPRVSA LQANPAAMSR SVNFHERS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552851.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010552851.1	0.0	PREDICTED: cyclic dof factor 2-like
Swissprot	Q93ZL5	0.0	CDF2_ARATH; Cyclic dof factor 2
TrEMBL	A0A178UGH8	0.0	A0A178UGH8_ARATH; CDF2
STRING	XP_010552851.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13795	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-159	cycling DOF factor 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]