PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552787.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 355aa    MW: 39692.4 Da    PI: 6.193
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552787.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.2e-061052339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     r C+ ++   + l+C+ ++  lC  C  e H+       H++
  XP_010552787.1 10 RRLCDYCDASVALLYCRADSAKLCLACDNEVHHTnqlfakHSR 52
                    689******99********************744467777765 PP
2zf-B_box261.8e-0852101241
        zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..........Htvvp 41 
                     + + C+ +++  ++ fCe+ ++ lC++C  e H++          H+++p
  XP_010552787.1  52 RSQLCDSCDDAAASVFCETERCVLCQNCDWERHNSssgdgrssavHSRRP 101
                     5689******99*********************87888888888887776 PP
3CCT61.92.1e-21311354144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R+ al+RYkeK+ktR++eK+irYesRK++AesR R++GrF+k++
  XP_010552787.1 311 RDSALSRYKEKKKTRRYEKHIRYESRKVRAESRARIRGRFAKAD 354
                     899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.818855IPR000315B-box-type zinc finger
SMARTSM003362.9E-12855IPR000315B-box-type zinc finger
PfamPF006434.0E-51052IPR000315B-box-type zinc finger
CDDcd000218.26E-61155No hitNo description
PROSITE profilePS5011910.2151102IPR000315B-box-type zinc finger
PfamPF006433.1E-55385IPR000315B-box-type zinc finger
CDDcd000214.08E-65584No hitNo description
SMARTSM003360.9256102IPR000315B-box-type zinc finger
PfamPF062032.6E-15311353IPR010402CCT domain
PROSITE profilePS5101714.813311353IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTEAESQKRR RLCDYCDASV ALLYCRADSA KLCLACDNEV HHTNQLFAKH SRSQLCDSCD  60
DAAASVFCET ERCVLCQNCD WERHNSSSGD GRSSAVHSRR PLEGFTGCPS VTELLAIVGF  120
DNLSDKALVL SEDGVAGLPG SGSAGLSECL LWETPEIVSL NDLIASGGSD HNFRAMDIPP  180
LPKNRHAACG KHEVEMLRQF RALAKSEPPC LKHEAVDTEL DVGLQFLGSE AGYDPENFSP  240
FPSWEVNGIK WSDLEDDDAI PYISSPRNSI SEEKWNSADN VIRRSHCPEE TVMVPVVRRA  300
LPHHEINSQE RDSALSRYKE KKKTRRYEKH IRYESRKVRA ESRARIRGRF AKADP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1711KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552787.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552787.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
SwissprotO822561e-135COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A087H5Y81e-144A0A087H5Y8_ARAAL; Uncharacterized protein
STRINGXP_010552787.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-125B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]