PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010552725.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 183aa MW: 20625.5 Da PI: 10.4555 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 64 | 106 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ +Ed+l+++++++lG++ W++Ia +++ gR++ q++++w+++l XP_010552725.1 64 FSGDEDDLIIKLHALLGNR-WSLIAGRLP-GRSDDQVRNHWNSHL 106 7789***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 41 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.16E-19 | 41 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.579 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-14 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 62 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.16E-12 | 64 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-20 | 69 | 107 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MRSLTTQEDM KRGALIMSEQ VNRKLIHTFR YRRGRLPLGG VRCGKSCRAR RINHARPELK 60 TGGFSGDEDD LIIKLHALLG NRWSLIAGRL PGRSDDQVRN HWNSHLKRKL MNMGMDPSNH 120 RLNHHNHCFC GREPHNNAMA DIAYKADDES SASHSTGPSD HGIVPVDPMP PTASLLERII 180 NVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-19 | 42 | 110 | 40 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010552725.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010552725.1 | 1e-134 | PREDICTED: myb-related protein 330 isoform X1 | ||||
TrEMBL | A0A1U8ABB2 | 8e-44 | A0A1U8ABB2_NELNU; transcription repressor MYB4-like | ||||
STRING | XP_010552725.1 | 1e-134 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71030.1 | 2e-39 | MYB-like 2 |