PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552663.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 326aa    MW: 36258.9 Da    PI: 4.7323
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-092693032155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yp+++++  LA+++gL+++q+ +WF N+R ++
  XP_010552663.1 269 KWPYPTEADKIALAEETGLDQKQINNWFINQRKRH 303
                     669*****************************885 PP
2ELK28.53.4e-10223244122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     +LK++L+r ++g+++sLk EFs
  XP_010552663.1 223 DLKDRLMRRFGGRISSLKLEFS 244
                     69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-2084128IPR005540KNOX1
PfamPF037908.5E-2186126IPR005540KNOX1
SMARTSM012561.6E-26135186IPR005541KNOX2
PfamPF037911.2E-24139185IPR005541KNOX2
SMARTSM011888.1E-5223244IPR005539ELK domain
PfamPF037891.3E-7223244IPR005539ELK domain
PROSITE profilePS512139.865223243IPR005539ELK domain
PROSITE profilePS5007112.86243306IPR001356Homeobox domain
SuperFamilySSF466891.67E-19244316IPR009057Homeodomain-like
SMARTSM003891.8E-13245310IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-27248307IPR009057Homeodomain-like
CDDcd000864.39E-14252307No hitNo description
PfamPF059201.4E-17263302IPR008422Homeobox KN domain
PROSITE patternPS000270281304IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDGMYGFHSA GDYSDKAALM MSPEALMLPS DYQSLICSSA GENRVSDVFG SDELLSAAAS  60
ALSSEAVSIA PPEIRRAEDN VPLGVVKAKI ACHPLYPRLL QAYIDCQKVG APSEIAGLLD  120
EIQRESSLYK RGVAPLSCLG ADPELDEFME TYCDILVKYK SDLARPFDEA TNFLNKIETQ  180
LRNLCTTGAS ARALSDDGVA SSDEELTGGE VAQDGQPKTE DVDLKDRLMR RFGGRISSLK  240
LEFSKKKKKG KLPRDARQAL LQWWNLHYKW PYPTEADKIA LAEETGLDQK QINNWFINQR  300
KRHWKPSENM PFVMMDDSNG TFSNED
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552663.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552663.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS60.0KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1J3I5Y41e-180A0A1J3I5Y4_NOCCA; Homeobox protein knotted-1-like 6
STRINGXP_010552663.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-175KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]