PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552578.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 420aa MW: 48013.5 Da PI: 6.8413

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.7	4.7e-53	12	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t++g+Wkatg+d++++s+ XP_010552578.1 12 MLPGFRFHPTDEELVSFYLKRKVQQRPLSV-ELIRQLDIYKYDPWDLPKFATTGEKEWYFYCQRDRKYRNSTRPNRVTDAGFWKATGTDRPIYSS 105 579*************************.89***********8888899***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfy+gra kg+ktdW+mhe+rl XP_010552578.1 106 dGNKCIGLKKSLVFYRGRAAKGVKTDWMMHEFRL 139 56667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-58	11	168	IPR003441	NAC domain
PROSITE profile	PS51005	56.974	12	168	IPR003441	NAC domain
Pfam	PF02365	2.0E-25	14	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MGDKNEGDHE FMLPGFRFHP TDEELVSFYL KRKVQQRPLS VELIRQLDIY KYDPWDLPKF 60 ATTGEKEWYF YCQRDRKYRN STRPNRVTDA GFWKATGTDR PIYSSDGNKC IGLKKSLVFY 120 RGRAAKGVKT DWMMHEFRLP SLSDPSAASP KRFFHNADSW AICRIFKKTN PTALRALSQS 180 FVSSLPPETA RDTRNRNPSN STQSYPDKIL KATSYNQFRH ENTDTAHQKP YSDDTNATNN 240 SANPFSYLDF TSYNQPSNVT NSLPFPDQQD LKSLLLAPQE TQLQFPKFTW NDISSFLLNT 300 SSDSSVFEGF SNQIDPSINF GEVMAHDQCP PLVSLPQEYQ KNGFEENVHM KNTRGVDGDG 360 CQYQTLGHMG FTLGDFTESV TDEDHQGLKQ RMLLDCSYPL LSSSISGELP SCFSITKCFT

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MGDKNEGDHE FMLPGFRFHP TDEELVSFYL KRKVQQRPLS VELIRQLDIY KYDPWDLPKF  60
ATTGEKEWYF YCQRDRKYRN STRPNRVTDA GFWKATGTDR PIYSSDGNKC IGLKKSLVFY  120
RGRAAKGVKT DWMMHEFRLP SLSDPSAASP KRFFHNADSW AICRIFKKTN PTALRALSQS  180
FVSSLPPETA RDTRNRNPSN STQSYPDKIL KATSYNQFRH ENTDTAHQKP YSDDTNATNN  240
SANPFSYLDF TSYNQPSNVT NSLPFPDQQD LKSLLLAPQE TQLQFPKFTW NDISSFLLNT  300
SSDSSVFEGF SNQIDPSINF GEVMAHDQCP PLVSLPQEYQ KNGFEENVHM KNTRGVDGDG  360
CQYQTLGHMG FTLGDFTESV TDEDHQGLKQ RMLLDCSYPL LSSSISGELP SCFSITKCFT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-51	14	168	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-51	14	168	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-51	14	168	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-51	14	168	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-51	14	168	22	168	NAC domain-containing protein 19
3swm_B	3e-51	14	168	22	168	NAC domain-containing protein 19
3swm_C	3e-51	14	168	22	168	NAC domain-containing protein 19
3swm_D	3e-51	14	168	22	168	NAC domain-containing protein 19
3swp_A	3e-51	14	168	22	168	NAC domain-containing protein 19
3swp_B	3e-51	14	168	22	168	NAC domain-containing protein 19
3swp_C	3e-51	14	168	22	168	NAC domain-containing protein 19
3swp_D	3e-51	14	168	22	168	NAC domain-containing protein 19
4dul_A	3e-51	14	168	19	165	NAC domain-containing protein 19
4dul_B	3e-51	14	168	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552578.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010552578.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-166	FEZ_ARATH; Protein FEZ
TrEMBL	A0A178WJ55	1e-163	A0A178WJ55_ARATH; FEZ
STRING	XP_010552578.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-159	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]