PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552571.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 383aa    MW: 42336.9 Da    PI: 9.065
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.73.1e-39119178261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+l+cprC+st+tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk +
  XP_010552571.1 119 PDKILPCPRCKSTDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGSMRNVPVGSGRRKNKGW 178
                     7899*****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-29108176IPR003851Zinc finger, Dof-type
PfamPF027011.7E-31121176IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.807123177IPR003851Zinc finger, Dof-type
PROSITE patternPS013610125161IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MYGHRDTAIK LFGRTITSFH DDPLSSSTVP SCSLGKEASS SSSSSCCPSF EPDKVKKKKK  60
KKPIADDNSS FKYPLMSPDL NEEPETGLEN SSPRSSKNNG DQHSEVTSES PEKTAMKKPD  120
KILPCPRCKS TDTKFCYYNN YNVNQPRHFC KNCQRYWTAG GSMRNVPVGS GRRKNKGWAS  180
SPPNQYLQID SDNNKGNNSA TILNFGSSGF MVTDPGEDRN GDMKGTADSA SQIVKNNGFL  240
APQVTFPVLP HWPYGWNPAI SNSNFYPMPF YWGCTVPLWP PNTSQCQGKR TRDQTSLETD  300
TSSKGTDRER VDEISESTRS FVKSKSAIRV EKTTGQDKNS TDKGLANNRS LVSESSMALQ  360
ANPAALARSL NFHENNSTVN DRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15561KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00223DAPTransfer from AT1G69570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552571.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893532e-53AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552571.10.0PREDICTED: cyclic dof factor 5-like
SwissprotQ9SEZ31e-110CDF5_ARATH; Cyclic dof factor 5
TrEMBLE4MY851e-117E4MY85_EUTHA; mRNA, clone: RTFL01-45-E10
TrEMBLV4KB081e-117V4KB08_EUTSA; Uncharacterized protein
STRINGXP_010552571.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM130901729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69570.11e-110Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Henriques R, et al.
    The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.
    New Phytol., 2017. 216(3): p. 854-867
    [PMID:28758689]
  3. Martín G, et al.
    Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis.
    Curr. Biol., 2018. 28(2): p. 311-318.e5
    [PMID:29337078]