PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010552571.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Dof | ||||||||
Protein Properties | Length: 383aa MW: 42336.9 Da PI: 9.065 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.7 | 3.1e-39 | 119 | 178 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+st+tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk + XP_010552571.1 119 PDKILPCPRCKSTDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGSMRNVPVGSGRRKNKGW 178 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-29 | 108 | 176 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-31 | 121 | 176 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.807 | 123 | 177 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 125 | 161 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MYGHRDTAIK LFGRTITSFH DDPLSSSTVP SCSLGKEASS SSSSSCCPSF EPDKVKKKKK 60 KKPIADDNSS FKYPLMSPDL NEEPETGLEN SSPRSSKNNG DQHSEVTSES PEKTAMKKPD 120 KILPCPRCKS TDTKFCYYNN YNVNQPRHFC KNCQRYWTAG GSMRNVPVGS GRRKNKGWAS 180 SPPNQYLQID SDNNKGNNSA TILNFGSSGF MVTDPGEDRN GDMKGTADSA SQIVKNNGFL 240 APQVTFPVLP HWPYGWNPAI SNSNFYPMPF YWGCTVPLWP PNTSQCQGKR TRDQTSLETD 300 TSSKGTDRER VDEISESTRS FVKSKSAIRV EKTTGQDKNS TDKGLANNRS LVSESSMALQ 360 ANPAALARSL NFHENNSTVN DRI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 61 | KKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00223 | DAP | Transfer from AT1G69570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010552571.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189353 | 2e-53 | AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010552571.1 | 0.0 | PREDICTED: cyclic dof factor 5-like | ||||
Swissprot | Q9SEZ3 | 1e-110 | CDF5_ARATH; Cyclic dof factor 5 | ||||
TrEMBL | E4MY85 | 1e-117 | E4MY85_EUTHA; mRNA, clone: RTFL01-45-E10 | ||||
TrEMBL | V4KB08 | 1e-117 | V4KB08_EUTSA; Uncharacterized protein | ||||
STRING | XP_010552571.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13090 | 17 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69570.1 | 1e-110 | Dof family protein |
Publications ? help Back to Top | |||
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