PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552570.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 388aa    MW: 44352.7 Da    PI: 7.1527
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.7e-16125170147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010552570.1 125 RGHWKPAEDNKLRELVAVYGPQNWNLIAEKLH-GRSGKSCRLRWFNQ 170
                      899*****************************.***********996 PP
2Myb_DNA-binding56.27.9e-18177220146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++++G++ W+ I+r ++ gRt++ +k++w+ 
   XP_010552570.1 177 RRAFTEEEEERLMQAHRLYGNK-WAMISRLFP-GRTDNAVKNHWHV 220
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.524120171IPR017930Myb domain
SuperFamilySSF466895.62E-29122218IPR009057Homeodomain-like
SMARTSM007171.3E-13124173IPR001005SANT/Myb domain
PfamPF002491.3E-15125170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-26126178IPR009057Homeodomain-like
CDDcd001671.28E-12128169No hitNo description
PROSITE profilePS5129427.055172226IPR017930Myb domain
SMARTSM007172.0E-14176224IPR001005SANT/Myb domain
PfamPF002491.2E-14177219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-20179225IPR009057Homeodomain-like
CDDcd001671.33E-11179219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEMVYADMAS LSITPLVVSS SSDYSSSSRY RQLSCNSVVL SEDLSWMDLI NAPRSWDLPF  60
NIENDHRLFN RSNFEVGFHQ SPSNLNNAVI KGEISDHNNS EVSGKEEADI INGNGKPSSK  120
ANISRGHWKP AEDNKLRELV AVYGPQNWNL IAEKLHGRSG KSCRLRWFNQ LDPRINRRAF  180
TEEEEERLMQ AHRLYGNKWA MISRLFPGRT DNAVKNHWHV IMARKYREHS TAYRRRKMIT  240
LKPLPKPIPN PDPSPNRTFN HNHHHLQPQQ KQLHHFTHPS FPEFNHGGLP LTHLVNAPNP  300
SDLHQPLMLP LHLFQGCEGN EAQMEGMFGN QMMDTSDQTI PHDVVTGFKD GPCHNFASME  360
AGETVTFERI SNDHQPPPFF DFLGVGDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-321222254107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552570.10.0PREDICTED: uncharacterized protein LOC104822908
TrEMBLD7KQL71e-102D7KQL7_ARALL; T24P13.16
STRINGXP_010552570.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-96myb domain protein 105