PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552546.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 540aa MW: 58442.5 Da PI: 6.0329

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552546.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7e-09	355	403	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010552546.1 355 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 403 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.47E-11	350	407	No hit	No description
SuperFamily	SSF47459	5.5E-17	350	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.478	352	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-17	353	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-6	355	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	358	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MDHIGDKDKF AVEKNSSVNN VSCDSVNKPA DWRVCVSNPV SLPTDSYPPG DPMSVGPSSF 60 SQSQMMNSFS KALWHDPSSV QTTGFGSFSV QTDAGSSGVL GVADGNLGSF RNNVDRPLET 120 GWNLSNPLPN GDILLLPNAN GFFPHSMAQI PADSGFITRA ARFSCYGSGI FGEMLNQPLG 180 VPEPIGLYSQ VCGTMQRLQD MPVGTVAKQA HGGQCSGNEL NVGELPKDAS TAVRDGFKND 240 AGTVIHVGAN EEVKVDKPGC SHMSDETRSS GGNGRNELQV GELKSGETPS KCFDRKKRKI 300 NSQSGEEPDN NGEKKENYER NTNLSPKKTS GGKQASDPPK EGYIHMRARR GQATNSHSLA 360 ERVRREKISE RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPQL 420 ELNLDGLMAK EALQLRPGPS SAPPFPQSIM PMAYPPLPHL SQPGFMEPTL SCMRNPSDVL 480 RQTVTSPLSP MNEGGFKRPE TQGWECDLQN VVHVCYGTDA TPENQEATGS LPPADMKVEQ

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MDHIGDKDKF AVEKNSSVNN VSCDSVNKPA DWRVCVSNPV SLPTDSYPPG DPMSVGPSSF  60
SQSQMMNSFS KALWHDPSSV QTTGFGSFSV QTDAGSSGVL GVADGNLGSF RNNVDRPLET  120
GWNLSNPLPN GDILLLPNAN GFFPHSMAQI PADSGFITRA ARFSCYGSGI FGEMLNQPLG  180
VPEPIGLYSQ VCGTMQRLQD MPVGTVAKQA HGGQCSGNEL NVGELPKDAS TAVRDGFKND  240
AGTVIHVGAN EEVKVDKPGC SHMSDETRSS GGNGRNELQV GELKSGETPS KCFDRKKRKI  300
NSQSGEEPDN NGEKKENYER NTNLSPKKTS GGKQASDPPK EGYIHMRARR GQATNSHSLA  360
ERVRREKISE RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPQL  420
ELNLDGLMAK EALQLRPGPS SAPPFPQSIM PMAYPPLPHL SQPGFMEPTL SCMRNPSDVL  480
RQTVTSPLSP MNEGGFKRPE TQGWECDLQN VVHVCYGTDA TPENQEATGS LPPADMKVEQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552546.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010552546.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X2
Swissprot	Q9CAA9	1e-172	BH049_ARATH; Transcription factor bHLH49
TrEMBL	R0GH97	0.0	R0GH97_9BRAS; Uncharacterized protein
STRING	XP_010552545.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-164	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]