PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552434.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 453aa MW: 50447.8 Da PI: 6.514

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1e-32	274	328	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFve v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl XP_010552434.1 274 KPRMRWTPELHERFVESVHKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 328 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10	271	331	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-31	272	329	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-17	273	328	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-24	274	329	IPR006447	Myb domain, plants
Pfam	PF00249	8.1E-10	276	327	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-20	367	414	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MGLEMVLRSL ESLGLPFVGA LFSPGLLRGE VSDLISIWSI LPQTTNSHSL VSTTPEECTK 60 GVRQACLSSV SPVHSFLNVQ PETRKSPSPF IRSRSPDSPS HPRTKHSSKS AFSRSSSFCT 120 NLYLSSSSSS ETQRQLGNSL PFLPNPLTYS QTASAFESAK SPAVFSEDLG APYDGDGDSE 180 GTLVKDFFNL PQDDDEFHEL GCPNDSFLLS EQMELQFLSD ELAETPRLDE IYKTPLALSN 240 PGIEMSRSQD CVPAVMSVDA VLSHPSPGSV PNHKPRMRWT PELHERFVES VHKLEGPEKA 300 TPKAVLKLMN VEGLTIYHVK SHLQKYRLAK YMPLPEKNEA EKKIGTSEEK KHSSSNSETD 360 GRKKGVMQIT EALRMPMEVQ KQLHEQLEVQ RALHRRIEEH ARYLQKILEE QQKAATLISS 420 SQTPCNSKPD NDKASEVEVS PRLVQNKSQS EHR

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MGLEMVLRSL ESLGLPFVGA LFSPGLLRGE VSDLISIWSI LPQTTNSHSL VSTTPEECTK  60
GVRQACLSSV SPVHSFLNVQ PETRKSPSPF IRSRSPDSPS HPRTKHSSKS AFSRSSSFCT  120
NLYLSSSSSS ETQRQLGNSL PFLPNPLTYS QTASAFESAK SPAVFSEDLG APYDGDGDSE  180
GTLVKDFFNL PQDDDEFHEL GCPNDSFLLS EQMELQFLSD ELAETPRLDE IYKTPLALSN  240
PGIEMSRSQD CVPAVMSVDA VLSHPSPGSV PNHKPRMRWT PELHERFVES VHKLEGPEKA  300
TPKAVLKLMN VEGLTIYHVK SHLQKYRLAK YMPLPEKNEA EKKIGTSEEK KHSSSNSETD  360
GRKKGVMQIT EALRMPMEVQ KQLHEQLEVQ RALHRRIEEH ARYLQKILEE QQKAATLISS  420
SQTPCNSKPD NDKASEVEVS PRLVQNKSQS EHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-24	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-24	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-24	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-24	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-24	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-24	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-24	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-24	274	331	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552434.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019059100.1	0.0	PREDICTED: LOW QUALITY PROTEIN: myb family transcription factor PHL6
Swissprot	Q949U2	1e-168	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	R0HYE1	1e-175	R0HYE1_9BRAS; Uncharacterized protein
STRING	XP_010552434.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-146	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]