PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552401.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 326aa    MW: 37152.3 Da    PI: 7.4374
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552401.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.61e-48451773128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                     pGfrFhPtd+elv +yL +kv++k++++ ++ik+vdiyk++Pwd+p + +++e+e yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s   
  XP_010552401.1  45 PGFRFHPTDDELVGFYLLRKVQKKPIKM-DIIKHVDIYKFDPWDIP-RSSNTENESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDsh 137
                     9***************************.99***************.5556789**************************************855 PP

             NAM  96 ...kgel......vglkktLvfykgrapkgektdWvmheyrl 128
                        +  +      +glkktLv+y+g+a kg+kt+W+mhe+rl
  XP_010552401.1 138 kaaG--DqsnsviIGLKKTLVYYRGSAGKGTKTEWMMHEFRL 177
                     5550..0555666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100550.11443207IPR003441NAC domain
SuperFamilySSF1019413.53E-5244207IPR003441NAC domain
PfamPF023656.5E-2545177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MIRQKISSES SEKDPTAMLI GDKIVDHINR GSEEEEDDGD VFPLPGFRFH PTDDELVGFY  60
LLRKVQKKPI KMDIIKHVDI YKFDPWDIPR SSNTENESYF FCKRGRKYRN SIRPNRVTGS  120
GFWKATGIDK PVYSDSHKAA GDQSNSVIIG LKKTLVYYRG SAGKGTKTEW MMHEFRLPTS  180
SDNVNNPNST SSSQEAEVWT LCRIFKRNVS SRKYTPDWRE LASSKRVKQH QPHTSFHQEA  240
YINFGDTDSA DVIPPHINEK NVVANKTNDG NMFHYANQLS ATHAVTTVLP AGPVPEFSND  300
NHQEFSYGNW DELRSMVDFA FGQSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-444521319171NO APICAL MERISTEM PROTEIN
1ut4_B1e-444521319171NO APICAL MERISTEM PROTEIN
1ut7_A1e-444521319171NO APICAL MERISTEM PROTEIN
1ut7_B1e-444521319171NO APICAL MERISTEM PROTEIN
3swm_A1e-444521322174NAC domain-containing protein 19
3swm_B1e-444521322174NAC domain-containing protein 19
3swm_C1e-444521322174NAC domain-containing protein 19
3swm_D1e-444521322174NAC domain-containing protein 19
3swp_A1e-444521322174NAC domain-containing protein 19
3swp_B1e-444521322174NAC domain-containing protein 19
3swp_C1e-444521322174NAC domain-containing protein 19
3swp_D1e-444521322174NAC domain-containing protein 19
4dul_A1e-444521319171NAC domain-containing protein 19
4dul_B1e-444521319171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552401.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552401.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-78NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A087H9311e-117A0A087H931_ARAAL; Uncharacterized protein
STRINGXP_010552401.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-114NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]