PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552235.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRF
Protein Properties Length: 331aa    MW: 37476.4 Da    PI: 7.4421
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.41.1e-2282126145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr+  +++k+CE+H+hrgr+r+rks e+
  XP_010552235.1  82 DTEPGRCRRTDGKKWRCSRESHPNSKYCEKHMHRGRNRTRKSLEN 126
                     689**************************************9986 PP

2QLQ591.4e-201752237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FT +Q+q+L++Q+l+yKy+++++PvPpeL++ i++
  XP_010552235.1 17 PFTTTQWQELEQQALVYKYMVSGVPVPPELIFSIRR 52
                    9*******************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-131652IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.1E-151751IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.3511752IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.36982126IPR014977WRC domain
PfamPF088798.0E-1984124IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MMGLTSGSGD GRSEMYPFTT TQWQELEQQA LVYKYMVSGV PVPPELIFSI RRSLHSSFSS  60
PLLPHQPFGW GCFQMGLGRK PDTEPGRCRR TDGKKWRCSR ESHPNSKYCE KHMHRGRNRT  120
RKSLENPAPL TSLTSSSSSV DGYSIISAHQ PSPRFSGNSS RSCLSHSLNY HYPSSWIDSG  180
LSLQNSSSHQ LNVLGSAGAC SQTDKDFSFR YLHGTMEGVG ERSFFPEASR SFQDSPYHQP  240
LTMMSRHCFE LGTDMFDKTT GTVPKESKPH EQDQDQDQGQ EQEHKKPLHH FFGEDWPPTT  300
KNSSDSWLDL SSNSRIDDNA WSDPNLIRRE T
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552235.10.0PREDICTED: growth-regulating factor 5-like
RefseqXP_010552236.10.0PREDICTED: growth-regulating factor 5-like
SwissprotQ8L8A61e-86GRF5_ARATH; Growth-regulating factor 5
TrEMBLA0A397ZL322e-98A0A397ZL32_BRACM; Uncharacterized protein
STRINGXP_010552235.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-67growth-regulating factor 5