PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010552235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GRF | ||||||||
Protein Properties | Length: 331aa MW: 37476.4 Da PI: 7.4421 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71.4 | 1.1e-22 | 82 | 126 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+ +++k+CE+H+hrgr+r+rks e+ XP_010552235.1 82 DTEPGRCRRTDGKKWRCSRESHPNSKYCEKHMHRGRNRTRKSLEN 126 689**************************************9986 PP | |||||||
2 | QLQ | 59 | 1.4e-20 | 17 | 52 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+q+L++Q+l+yKy+++++PvPpeL++ i++ XP_010552235.1 17 PFTTTQWQELEQQALVYKYMVSGVPVPPELIFSIRR 52 9*******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.1E-13 | 16 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.1E-15 | 17 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.351 | 17 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.369 | 82 | 126 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.0E-19 | 84 | 124 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MMGLTSGSGD GRSEMYPFTT TQWQELEQQA LVYKYMVSGV PVPPELIFSI RRSLHSSFSS 60 PLLPHQPFGW GCFQMGLGRK PDTEPGRCRR TDGKKWRCSR ESHPNSKYCE KHMHRGRNRT 120 RKSLENPAPL TSLTSSSSSV DGYSIISAHQ PSPRFSGNSS RSCLSHSLNY HYPSSWIDSG 180 LSLQNSSSHQ LNVLGSAGAC SQTDKDFSFR YLHGTMEGVG ERSFFPEASR SFQDSPYHQP 240 LTMMSRHCFE LGTDMFDKTT GTVPKESKPH EQDQDQDQGQ EQEHKKPLHH FFGEDWPPTT 300 KNSSDSWLDL SSNSRIDDNA WSDPNLIRRE T |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010552235.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010552235.1 | 0.0 | PREDICTED: growth-regulating factor 5-like | ||||
Refseq | XP_010552236.1 | 0.0 | PREDICTED: growth-regulating factor 5-like | ||||
Swissprot | Q8L8A6 | 1e-86 | GRF5_ARATH; Growth-regulating factor 5 | ||||
TrEMBL | A0A397ZL32 | 2e-98 | A0A397ZL32_BRACM; Uncharacterized protein | ||||
STRING | XP_010552235.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4567 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-67 | growth-regulating factor 5 |