PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552228.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 402aa    MW: 45112.1 Da    PI: 6.5566
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv++++ +G g+W++++++ g+ R++k+c++rw +yl
   XP_010552228.1 14 RGLWSPEEDEKLVNYITTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding48.71.7e-1567109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E  l++d++  lG++ W+ Ia++++ gRt++++k++w+
   XP_010552228.1  67 RGSFSPQEAALIIDLHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-27664IPR009057Homeodomain-like
PROSITE profilePS5129424.951965IPR017930Myb domain
SuperFamilySSF466893.18E-2911108IPR009057Homeodomain-like
SMARTSM007175.4E-141363IPR001005SANT/Myb domain
PfamPF002493.8E-161461IPR001005SANT/Myb domain
CDDcd001672.12E-121761No hitNo description
Gene3DG3DSA:1.10.10.607.1E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129420.15566116IPR017930Myb domain
SMARTSM007173.1E-1566114IPR001005SANT/Myb domain
PfamPF002496.8E-1467110IPR001005SANT/Myb domain
CDDcd001675.60E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIT TYGHGCWSSV PKHAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIID LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLMSHD  120
HHHRHHHISS IASLITNFPH HHHNGFMNNV NTHNGGEEAS GFFSLLTNTN PSFITPNHID  180
HLYLPPPVFT PVMFQSFGHV DFKFNDSSQV QNLYNPDNLV IAPTNHHSFL PSDYDPHITT  240
LPDSDSSSAF NHQPPWALPD LPASISATFQ ETQVVEISFQ DYVGHDDKLI IDPMVSLSPY  300
DDDPLHHSLV TTTVIPSTVS KLSEEVLEGK ATSHPRGLHV SAADHDDDDD DDHQVDSYIN  360
SMIMPSLQSS SSPSPVSSRQ YVATVPNPST TNTTTTMSRW DP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552228.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552228.10.0PREDICTED: transcription factor MYB26-like
SwissprotQ9SPG31e-103MYB26_ARATH; Transcription factor MYB26
TrEMBLA0A087H9E61e-111A0A087H9E6_ARAAL; Uncharacterized protein
STRINGXP_010552228.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128031930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.21e-107myb domain protein 26
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]