PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010552212.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 509aa MW: 55731.9 Da PI: 8.2955 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 4.9e-05 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F r nL+ H r H XP_010552212.1 107 FICDICNKGFQRDQNLQLHRRGH 129 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.5E-5 | 106 | 129 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.67E-6 | 106 | 129 | No hit | No description |
PROSITE profile | PS50157 | 10.783 | 107 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.027 | 107 | 129 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 149 | 179 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.67E-6 | 179 | 204 | No hit | No description |
SMART | SM00355 | 150 | 184 | 204 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MDEMMNEDMP FHQHHRQQQQ VIAEENMSNL TSASGDHQAS VSSGNRTEAN GSNFVNQQQQ 60 QQQCFVPQLQ AQSSQPPKKK RNQPGNPDPE AEVIALSPKT LMATNRFICD ICNKGFQRDQ 120 NLQLHRRGHN LPWKLKQRSK TEAVRKKVYV CPEASCVHHE PSRALGDLTG IKKHFCRKHG 180 EKKWKCDKCS KRYAVQSDCK AHFKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESE 240 RANPTHQPNP ISIQSSYQTP QPNNPPPSYN NVVSNSGSSN NSNNLHGFSM KKEQEIDINF 300 THPPWLSPPP FPCSKAETPS VVFPSNPNPS FAAAGALFPS FHRPSPPSPA LSATALLQRA 360 AQMGATTTTP SPAEEIRSSS SHALKTTMAA VMTSPYPASG FGFSASGNAD NPSMFQGYNT 420 MNPAAGFEAF DESFGGFLRA NATTAAASVA PAVGEKYGGG RGIGEGLTRD FLGLTPLSHS 480 EILSFSDLGD CFSGNASEQQ QRRDHSQNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-32 | 180 | 249 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 5e-32 | 180 | 249 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 146 | KQRSKTEAVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010552212.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010552210.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like | ||||
Refseq | XP_010552211.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like | ||||
Refseq | XP_010552212.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like | ||||
Refseq | XP_010552213.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like | ||||
Swissprot | Q9LRW7 | 1e-172 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | A0A1J3JPP2 | 0.0 | A0A1J3JPP2_NOCCA; Protein indeterminate-domain 11 | ||||
STRING | XP_010552209.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 1e-128 | indeterminate(ID)-domain 11 |
Publications ? help Back to Top | |||
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