PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552209.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 509aa MW: 55731.9 Da PI: 8.2955

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552209.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.9e-05	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F r nL+ H r H XP_010552209.1 107 FICDICNKGFQRDQNLQLHRRGH 129 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.5E-5	106	129	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.67E-6	106	129	No hit	No description
PROSITE profile	PS50157	10.783	107	129	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.027	107	129	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	109	129	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	149	179	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.67E-6	179	204	No hit	No description
SMART	SM00355	150	184	204	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MDEMMNEDMP FHQHHRQQQQ VIAEENMSNL TSASGDHQAS VSSGNRTEAN GSNFVNQQQQ 60 QQQCFVPQLQ AQSSQPPKKK RNQPGNPDPE AEVIALSPKT LMATNRFICD ICNKGFQRDQ 120 NLQLHRRGHN LPWKLKQRSK TEAVRKKVYV CPEASCVHHE PSRALGDLTG IKKHFCRKHG 180 EKKWKCDKCS KRYAVQSDCK AHFKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESE 240 RANPTHQPNP ISIQSSYQTP QPNNPPPSYN NVVSNSGSSN NSNNLHGFSM KKEQEIDINF 300 THPPWLSPPP FPCSKAETPS VVFPSNPNPS FAAAGALFPS FHRPSPPSPA LSATALLQRA 360 AQMGATTTTP SPAEEIRSSS SHALKTTMAA VMTSPYPASG FGFSASGNAD NPSMFQGYNT 420 MNPAAGFEAF DESFGGFLRA NATTAAASVA PAVGEKYGGG RGIGEGLTRD FLGLTPLSHS 480 EILSFSDLGD CFSGNASEQQ QRRDHSQNP

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MDEMMNEDMP FHQHHRQQQQ VIAEENMSNL TSASGDHQAS VSSGNRTEAN GSNFVNQQQQ  60
QQQCFVPQLQ AQSSQPPKKK RNQPGNPDPE AEVIALSPKT LMATNRFICD ICNKGFQRDQ  120
NLQLHRRGHN LPWKLKQRSK TEAVRKKVYV CPEASCVHHE PSRALGDLTG IKKHFCRKHG  180
EKKWKCDKCS KRYAVQSDCK AHFKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESE  240
RANPTHQPNP ISIQSSYQTP QPNNPPPSYN NVVSNSGSSN NSNNLHGFSM KKEQEIDINF  300
THPPWLSPPP FPCSKAETPS VVFPSNPNPS FAAAGALFPS FHRPSPPSPA LSATALLQRA  360
AQMGATTTTP SPAEEIRSSS SHALKTTMAA VMTSPYPASG FGFSASGNAD NPSMFQGYNT  420
MNPAAGFEAF DESFGGFLRA NATTAAASVA PAVGEKYGGG RGIGEGLTRD FLGLTPLSHS  480
EILSFSDLGD CFSGNASEQQ QRRDHSQNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-32	180	249	3	72	Zinc finger protein JACKDAW
5b3h_F	5e-32	180	249	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	146	KQRSKTEAVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552209.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010552210.1	0.0	PREDICTED: protein indeterminate-domain 11-like
Refseq	XP_010552211.1	0.0	PREDICTED: protein indeterminate-domain 11-like
Refseq	XP_010552212.1	0.0	PREDICTED: protein indeterminate-domain 11-like
Refseq	XP_010552213.1	0.0	PREDICTED: protein indeterminate-domain 11-like
Swissprot	Q9LRW7	1e-172	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A1J3JPP2	0.0	A0A1J3JPP2_NOCCA; Protein indeterminate-domain 11
STRING	XP_010552209.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-128	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]