PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010552190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 378aa MW: 42162.7 Da PI: 4.4163 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.2e-19 | 120 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g XP_010552190.1 120 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDDEARRIRG 169 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-22 | 120 | 178 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-38 | 120 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.841 | 120 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 120 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.72E-32 | 120 | 178 | No hit | No description |
Pfam | PF00847 | 1.8E-11 | 121 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MCGGAIISDF IPPARSRRGA NDNIWADLKK NAKKSARKRS AFFDLDDEFE ADFQGFKNDS 60 SVDFEDDFEA DDVFADVKPP VFATSPKPAA AESDGFAPAK KAPEFNGQAE KSATRKRKNQ 120 YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DDEARRIRGK KAKVNFPEET 180 PRVGQNRPAK AYPQKPVAKP NPTLVQPYMD QNLNAFGNLG QDCFDNMGMV DEKPQVNLNS 240 FDNGLNAAFP YFSSDQGSNS FDCSEFGWND EGPKTPEISS MLVNDPAPFL EDTNPAKKLK 300 PTTQEVTPVS NTDESLSDEL MMEMGNQIPF QAPYLDNNNW EASLEAFLNG DDAMAQDGSN 360 PMDLWTFDEI PSMLEGIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-21 | 119 | 179 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010552190.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010552190.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1 | ||||
Swissprot | Q9SSA8 | 1e-112 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A061GJV1 | 1e-134 | A0A061GJV1_THECC; Transcription factor JERF1, putative isoform 1 | ||||
STRING | XP_010552190.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 3e-94 | related to AP2 2 |