PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552064.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 136aa    MW: 14877.5 Da    PI: 4.8747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-202071255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +g+++AeIrd   +g+ +r++lg+f+taeeAa+a+++a+ +++g
  XP_010552064.1 20 KYRGVRKRP-WGKYAAEIRDS-GRGQGARVWLGTFDTAEEAAQAYDRAAYAMRG 71
                    8********.**********3.34456*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.48E-292079No hitNo description
PROSITE profilePS5103223.1962079IPR001471AP2/ERF domain
SMARTSM003801.1E-332085IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-302080IPR001471AP2/ERF domain
PfamPF008472.4E-152071IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-212080IPR016177DNA-binding domain
PRINTSPR003678.0E-122132IPR001471AP2/ERF domain
PRINTSPR003678.0E-124561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEDNNMEHNE VNKTTTGEVK YRGVRKRPWG KYAAEIRDSG RGQGARVWLG TFDTAEEAAQ  60
AYDRAAYAMR GSLAILNFPR DYSAGKLPGE SIHGGDVAAG AGVGKEVIEF ECLDDRLLEE  120
LLEHGECIGK GNSNKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-312011714114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552064.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552064.16e-97PREDICTED: ethylene-responsive transcription factor ERF095-like
SwissprotQ9LTC54e-32ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T02e-43A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGXP_010552064.12e-96(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.14e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]