PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551972.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 381aa    MW: 41189.3 Da    PI: 5.4602
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.4e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++   +C+++  +lC +C  + H+       H++
  XP_010551972.1  4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                    6*****************************65677777765 PP
2zf-B_box201.5e-064689440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvv 40
                     +C+++++++++  Ce+ ++ lC++C   +H g        H+++
  XP_010551972.1 46 LVCERCHSQPASVRCEEERVSLCQNCEWLGH-GtsnpssahHKRQ 89
                    68************************99999.5478888877766 PP
3CCT60.94.2e-21324367144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a++RYkeK+k+RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  XP_010551972.1 324 RSNAVMRYKEKKKSRKFDKRVRYASRKARADVRRRVKGRFVKAG 367
                     899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.527147IPR000315B-box-type zinc finger
CDDcd000211.06E-7447No hitNo description
SMARTSM003363.7E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.4994391IPR000315B-box-type zinc finger
CDDcd000216.18E-64791No hitNo description
SMARTSM003361.34891IPR000315B-box-type zinc finger
PROSITE profilePS5101715.368324366IPR010402CCT domain
PfamPF062038.0E-16324366IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CHSQPASVRC  60
EEERVSLCQN CEWLGHGTSN PSSAHHKRQT INCYSGCPSS SELASIWSFV SDNSSVGQSA  120
CEQEMGLMSI ADGLRENSIA QDGNVDQPDG SSSVPETSSA AHRMDPPPSL PGSSRLAKGL  180
GVCDDDFYGN LIEDEVDLAL ENYEELFGVA FNASEEFFEN GGLDSLFEKP SAAPEGSSAG  240
LGNTMQPAGS NAASADSFMS AKTDSIICFT SRPAHSNISF SGITGESSAG DYQDCGVSSV  300
RLSGEPPWCP PSSQDNASSQ AASRSNAVMR YKEKKKSRKF DKRVRYASRK ARADVRRRVK  360
GRFVKAGDAY DYDPLSQTRS Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551972.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551970.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_010551971.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_010551972.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A061DL860.0A0A061DL86_THECC; B-box type zinc finger protein with CCT domain isoform 1
STRINGXP_010551970.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-155B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]