PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551863.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 575aa    MW: 61448.9 Da    PI: 8.302
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551863.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30226285159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+
  XP_010551863.1 226 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCADDMSILITTYEGTHNHP 285
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-32211287IPR003657WRKY domain
SuperFamilySSF1182907.45E-28219287IPR003657WRKY domain
PROSITE profilePS5081128.461221287IPR003657WRKY domain
SMARTSM007741.9E-37226286IPR003657WRKY domain
PfamPF031062.4E-27227285IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MEVLAKPPSS ASPVKDEMGR RSSSPTSKTN SNNPRTGKKE GDHELETAKA EMSEVKEENE  60
RLRMMLERIE NDYRCLKLRF FDIIQQDTPT KTAQESPHDE DPSSSDQEER DLVSLSLGGR  120
SSSPGNGVAK KEEKSGAAGE KEELTKAGLT LGFSPDPKTR LSSQNVASSS RENSLEEGTN  180
KEEEAGAETK ATGKRSPGGD VDEIGQQNHV KRARVCVRAR CDAPTMNDGC QWRKYGQKIA  240
KGNPCPRAYY RCTVAPNCPV RKQVQRCADD MSILITTYEG THNHPLPMSA TAMASTTSAA  300
ASMLLSGSST SSQSQSTATV SASDMIGNGF NFNLYDKSQL ISNKLFYSPA TTGLSPLHPT  360
VTLDLTAPPQ GNSSLNFNRF PSSTSSSQRI FPSTSFSFSS SSASSAINLP AMWGNPNGYP  420
YSRSVPYNSV QFGQSNSLNT GKAAKQSQES LTETLTKALT SDPSFQSVIA AAISTMVGSG  480
NGEQMARGRE GLVHENPTRN KINVLNSSVQ GNQQIASINN KGCGGGGYFS SLLSSTMANP  540
QAGGGSSEKS SQLPFSIFKK ASATTTSFAD KEDKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20213287174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551863.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551863.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG81e-174WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A178UB991e-173A0A178UB99_ARATH; WRKY72
STRINGXP_010551863.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-101WRKY DNA-binding protein 72