PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551857.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ZF-HD
Protein Properties Length: 278aa    MW: 29808.4 Da    PI: 9.4039
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551857.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.31.5e-3258114358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                     +v+Y+eC+kNhAa +Ggha+DGCgEfmps++++ + + +l+CaACgCHRnFHRr+++
  XP_010551857.1  58 AVTYRECQKNHAAGIGGHALDGCGEFMPSSSSDpTVPISLTCAACGCHRNFHRRSSS 114
                     689**************************9999899******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2152111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.9E-2759113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-3060112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.97961112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.97E-15162233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-27164234IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-24174232IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEIAHMVTTT TNTVIIPDPD SPGLELEAPT RILPAKPISF SNGKRHHHPP AASPAVGAVT  60
YRECQKNHAA GIGGHALDGC GEFMPSSSSD PTVPISLTCA ACGCHRNFHR RSSSSALEFR  120
PQNRHHPPPP LPLRSPDEDS ASPPPISSSY MLLALSGGRN SSAAGGTTAA PGTQKRFRTK  180
FSQHQKERML DFAERLGWRM PKAAEDTAVR EFCRQIGVEK GVFKVWMHNN KNTGRGGTRR  240
GFAFVGVDRR EKLAGTEDGG GVDAEGSFSP EGGKTSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211732341676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551857.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550055.11e-114PREDICTED: zinc-finger homeodomain protein 8-like
SwissprotQ9LXG01e-96ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A178UMR33e-94A0A178UMR3_ARATH; ZHD8
STRINGXP_010551857.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-76homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]