PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010551826.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29583.5 Da PI: 9.4421 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll ++v+++G g W+ ++++ g++R++k+c++rw++yl XP_010551826.1 10 KGTWTAEEDGLLRKCVEKYGEGKWHQVPSRAGLNRCRKSCRLRWLNYL 57 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5e-16 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr ++eE +l ++++k+lG++ W++Ia +++ gRt++++k++w+++l XP_010551826.1 63 RGRLSPEEVDLVIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108 8999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 5 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.326 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-29 | 7 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-15 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.58E-10 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 26.118 | 58 | 112 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 60 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 63 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.89E-10 | 67 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MEGRSQGLRK GTWTAEEDGL LRKCVEKYGE GKWHQVPSRA GLNRCRKSCR LRWLNYLKPS 60 IKRGRLSPEE VDLVIRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTHLSK KQDQPSHSKT 120 APACKKKINV GFPTEPVQKI DVIKPRPRSF SDSTQRRLLN PPPEIPFRGS KNKDSDNNDG 180 NNDDIFHGKK TITGCICKDE YEITSTVVKE GREVMWWENL LEEGEGTAAE EDEKIAAESS 240 WMNNSPATFD VDLWNLLNT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-22 | 8 | 113 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010551826.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551826.1 | 0.0 | PREDICTED: transcription factor MYB114-like isoform X2 | ||||
Swissprot | Q9FNV9 | 7e-75 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | E5D8F5 | 5e-80 | E5D8F5_BRAOB; MYB2 | ||||
STRING | XP_010551818.1 | 1e-161 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-76 | myb domain protein 113 |
Publications ? help Back to Top | |||
---|---|---|---|
|