PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010551810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 347aa MW: 38263.9 Da PI: 6.6801 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 104.5 | 1.8e-32 | 62 | 189 | 2 | 124 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas..nsssg.... 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk ++WLl +ak +i+el+ ++ s+++++ +++++ ++ n + XP_010551810.1 62 FGGKDRHSKVSTLRGLRDRRVRLSVPTAIQVYDLQERLGVDQPSKVVDWLLDAAKDEIDELPPLPISPENFTlfPHHHRQHQQLilN--LNpgls 154 689******************************************************************999853333333333331..223442 PP TCP 89 kaaksaa.kskksqksaasalnlak.esrakararare 124 +++ + k ++ + la+ e ++ r r++e XP_010551810.1 155 T-SQEPGqLGFKIGGDDD--STLANhEDEEQDRGREEE 189 2.2222212222222222..222221333333333222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.936 | 64 | 122 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.6E-29 | 64 | 192 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MNMASWREAD DDVSGARRDG STEAAAAANG KTVITKPPSS STSSSSWLRS KDPRIVRVSR 60 AFGGKDRHSK VSTLRGLRDR RVRLSVPTAI QVYDLQERLG VDQPSKVVDW LLDAAKDEID 120 ELPPLPISPE NFTLFPHHHR QHQQLILNLN PGLSTSQEPG QLGFKIGGDD DSTLANHEDE 180 EQDRGREEEN DERGKNDVGL GTNIHHHHHV GSSYGTYYNM EHHHQHHHHS SFQTEHHQNH 240 NLVPFPSQIL VCPTTNATTQ SLFPSPMEMM DPRQMVSQFQ LPASSRNVSA LYSLIHGFGA 300 HHNARMPVQF NQANTSAANA NANANAGNVP TILGSESSTS GGSDHPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 69 | 123 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 69 | 123 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010551810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551809.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_010551810.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
Swissprot | Q9S7W5 | 1e-111 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | D7LAL3 | 1e-113 | D7LAL3_ARALL; Uncharacterized protein | ||||
STRING | XP_010551809.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 1e-98 | plastid transcription factor 1 |
Publications ? help Back to Top | |||
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