PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551809.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 347aa    MW: 38263.9 Da    PI: 6.6801
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.51.8e-32621892124
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas..nsssg.... 88 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk ++WLl +ak +i+el+ ++ s+++++   +++++ ++   n   +    
  XP_010551809.1  62 FGGKDRHSKVSTLRGLRDRRVRLSVPTAIQVYDLQERLGVDQPSKVVDWLLDAAKDEIDELPPLPISPENFTlfPHHHRQHQQLilN--LNpgls 154
                     689******************************************************************999853333333333331..223442 PP

             TCP  89 kaaksaa.kskksqksaasalnlak.esrakararare 124
                       +++    + k   ++   + la+ e  ++ r r++e
  XP_010551809.1 155 T-SQEPGqLGFKIGGDDD--STLANhEDEEQDRGREEE 189
                     2.2222212222222222..222221333333333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.93664122IPR017887Transcription factor TCP subgroup
PfamPF036342.6E-2964192IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNMASWREAD DDVSGARRDG STEAAAAANG KTVITKPPSS STSSSSWLRS KDPRIVRVSR  60
AFGGKDRHSK VSTLRGLRDR RVRLSVPTAI QVYDLQERLG VDQPSKVVDW LLDAAKDEID  120
ELPPLPISPE NFTLFPHHHR QHQQLILNLN PGLSTSQEPG QLGFKIGGDD DSTLANHEDE  180
EQDRGREEEN DERGKNDVGL GTNIHHHHHV GSSYGTYYNM EHHHQHHHHS SFQTEHHQNH  240
NLVPFPSQIL VCPTTNATTQ SLFPSPMEMM DPRQMVSQFQ LPASSRNVSA LYSLIHGFGA  300
HHNARMPVQF NQANTSAANA NANANAGNVP TILGSESSTS GGSDHPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1869123155Putative transcription factor PCF6
5zkt_B1e-1869123155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551809.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551809.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_010551810.10.0PREDICTED: transcription factor TCP13-like
SwissprotQ9S7W51e-111TCP13_ARATH; Transcription factor TCP13
TrEMBLD7LAL31e-113D7LAL3_ARALL; Uncharacterized protein
STRINGXP_010551809.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-98plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  3. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]