PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551592.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 321aa    MW: 35919.7 Da    PI: 4.6955
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551592.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.51.1e-082632982055
                     HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  XP_010551592.1 263 YKWPYPTEGDKIALAEATGLDQKQINNWFINQRKRH 298
                     4679*****************************885 PP
2ELK271e-09218239122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     +LK++L+r ++g++ sLk EFs
  XP_010551592.1 218 DLKDRLMRRFGGRITSLKLEFS 239
                     69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.6E-2179123IPR005540KNOX1
PfamPF037902.4E-2182122IPR005540KNOX1
SMARTSM012564.8E-24130181IPR005541KNOX2
PfamPF037914.7E-23134179IPR005541KNOX2
SMARTSM011882.0E-4218239IPR005539ELK domain
PROSITE profilePS512139.725218238IPR005539ELK domain
PfamPF037891.5E-7218239IPR005539ELK domain
PROSITE profilePS5007112.438238301IPR001356Homeobox domain
SuperFamilySSF466893.42E-19239314IPR009057Homeodomain-like
SMARTSM003892.5E-12240305IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-27243302IPR009057Homeodomain-like
CDDcd000867.20E-12247302No hitNo description
PfamPF059204.4E-17258297IPR008422Homeobox KN domain
PROSITE patternPS000270276299IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDGMYGFHLA GDYSEKAALM LTPEALVLPS DYQALLCSST GENRVSDELI SAAASALSSE  60
AASIAAPEFR RAEDNVSLGV FKAKIACHPL YPRLLQAYID CQKVGAPPEI AGLLDEIQKE  120
SDVFKQEVAP SSCLGADPEL DEFMETYCDI LVKYKSDLAR PFDEATDFLN KMEMQLRNLL  180
TAGASTRALS DDGAASSDEE LRGGEIPQDG LSKAEDRDLK DRLMRRFGGR ITSLKLEFSK  240
KKKKGKLPRD ARQALLEWWN LHYKWPYPTE GDKIALAEAT GLDQKQINNW FINQRKRHWK  300
PSENMPFMMM DDSSGPFFND E
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551592.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551592.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS60.0KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1J3I5Y41e-175A0A1J3I5Y4_NOCCA; Homeobox protein knotted-1-like 6
STRINGXP_010551592.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-174KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]