PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010551540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NAC | ||||||||
Protein Properties | Length: 415aa MW: 47277.2 Da PI: 8.0148 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168 | 3.1e-52 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv++yL++kv++++l++ e i+++diyk++PwdLpk + a+ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ XP_010551540.1 16 MLPGFRFHPTDEELVSFYLRRKVQQRPLSV-ELIRQLDIYKYDPWDLPKFAMAGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 109 579***************************.89***************7777889***************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfy+gra kg ktdW+mhe+rl XP_010551540.1 110 dGSRCIGLKKSLVFYRGRAAKGAKTDWMMHEFRL 143 66777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-59 | 14 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.514 | 16 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-25 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MGDKNKGEGE KMEEMMLPGF RFHPTDEELV SFYLRRKVQQ RPLSVELIRQ LDIYKYDPWD 60 LPKFAMAGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSD GSRCIGLKKS 120 LVFYRGRAAK GAKTDWMMHE FRLPSLSDNA SPPPKRLFEN ALSPNDSWAI CRIFKKTNPT 180 ALKRALSHSF VSSLPPETTF QTPNSTRSCS DKILKTSAYV HFHQIPYSDD KNATDCSRTP 240 LTATISNPLS YLGFTSYDRP GNVISSVPFP DPNLLLASQE TQSQFQKLTS NDISSLLLNV 300 SPDSSVLGEF TDRMDRDIGF GSAVAAQEQC PALVSFPHEH HENGFEENVR TKRNMRGNHE 360 EQQFETFRYM GGGFEMDDHH QDLKRNMLLE GSYPSLSAIN GEFPPCFSTI TRCFT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 18 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 18 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 18 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 18 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-54 | 18 | 176 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-54 | 18 | 176 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-54 | 18 | 176 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-54 | 18 | 176 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-54 | 18 | 176 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-54 | 18 | 176 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-54 | 18 | 176 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-54 | 18 | 176 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-54 | 18 | 176 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 18 | 176 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010551540.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551540.1 | 0.0 | PREDICTED: protein FEZ | ||||
Swissprot | Q9ZVH0 | 1e-165 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A178WJ55 | 1e-162 | A0A178WJ55_ARATH; FEZ | ||||
STRING | XP_010551540.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-160 | NAC family protein |
Publications ? help Back to Top | |||
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