PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010551441.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 304aa MW: 33924.1 Da PI: 6.5905 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.2 | 2.9e-31 | 20 | 74 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLH+ Fveav qLGG+ekAtPk ++++m+++gLtl+h+kSHLQkYRl XP_010551441.1 20 KPRLKWTSELHHMFVEAVCQLGGPEKATPKGLMKVMGIPGLTLYHLKSHLQKYRL 74 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 18 | 76 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.24E-16 | 19 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-22 | 20 | 75 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.4E-6 | 22 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-23 | 123 | 169 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MAMESDQRAS MNLVLSTDAK PRLKWTSELH HMFVEAVCQL GGPEKATPKG LMKVMGIPGL 60 TLYHLKSHLQ KYRLGKSQQP DGSCVVDNKQ EVASSSEEER LVQSSGNDHE NVKGSEIHDE 120 SKQMADALQM QMEVQKKLHE QIEVQRHLQV RIEAQGKYLQ SVLEKARETL AGYTSSNLGL 180 DFARAELSKL ASMVNRGCPS SSFSDITEAE GEGERGFLDH KKPENAGSQT RCSAESSMTS 240 SESTDTKSDN YEIVTRRSIE LPLMETKPEA LNRKKRTLND DAHVEQPPRG KRAFEGEHLR 300 LSLS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-20 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-20 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-20 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-20 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-20 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-20 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-20 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-20 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-20 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-20 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-20 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-20 | 19 | 78 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010551441.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551441.1 | 0.0 | PREDICTED: myb family transcription factor PHL8 isoform X2 | ||||
Swissprot | F4I274 | 1e-119 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A178WNY6 | 1e-116 | A0A178WNY6_ARATH; Uncharacterized protein | ||||
STRING | XP_010551440.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69580.1 | 1e-117 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|