PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551439.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 373aa MW: 41122.6 Da PI: 8.7358

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	119	177	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk + XP_010551439.1 119 GEVLPCPRCKSKDTKFCYYNNYNMNQPRHFCKNCQRYWTAGGSMRNVPVGSGRRKNKGW 177 67899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	115	175	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-31	121	175	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.686	122	176	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	124	160	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MSETRDMAMI KLFGKTITSL FGEANHDDVP CRFLEKETSP SSSSSCFPPS GSDKVMNLIA 60 DDNEQDNISS KCLLISIDLN DEPKETSSPE SSGNNGDQNS EVTTMTSASP DKTAMNKPGE 120 VLPCPRCKSK DTKFCYYNNY NMNQPRHFCK NCQRYWTAGG SMRNVPVGSG RRKNKGWASS 180 PDQYPQFNSD NNNNNSTTIL RFGSSGFMVS DSGKDCKGDG KVASDSASQN AKNYHQGFLA 240 PQVTFPVPPP WPNPNFHPFP FFWSCTVPLG SPNASPCRGK RTRDETSLET ERVSKDSDRK 300 RVVSSESPRV DEPRSKSAIR PEKTGKGKNS TVKWSEPKVN NGNFAFGSSL SMHANPAAFA 360 RSIKFHENKT TNI

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MSETRDMAMI KLFGKTITSL FGEANHDDVP CRFLEKETSP SSSSSCFPPS GSDKVMNLIA  60
DDNEQDNISS KCLLISIDLN DEPKETSSPE SSGNNGDQNS EVTTMTSASP DKTAMNKPGE  120
VLPCPRCKSK DTKFCYYNNY NMNQPRHFCK NCQRYWTAGG SMRNVPVGSG RRKNKGWASS  180
PDQYPQFNSD NNNNNSTTIL RFGSSGFMVS DSGKDCKGDG KVASDSASQN AKNYHQGFLA  240
PQVTFPVPPP WPNPNFHPFP FFWSCTVPLG SPNASPCRGK RTRDETSLET ERVSKDSDRK  300
RVVSSESPRV DEPRSKSAIR PEKTGKGKNS TVKWSEPKVN NGNFAFGSSL SMHANPAAFA  360
RSIKFHENKT TNI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551439.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010551439.1	0.0	PREDICTED: cyclic dof factor 5
TrEMBL	A0A087HGX7	2e-96	A0A087HGX7_ARAAL; Dof zinc finger protein
STRING	XP_010551439.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13090	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	6e-68	Dof family protein